Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1534 ATGGCTATGTTGTTGTCTACAATCGTTGTTCCTTCTACCAAGCTTGTCATCTTCAACAACAACATGCAAGAGCGTGCAGTTCCAAGTTTTCGTCATTTCTCAGGTACTAGCAAGCGCTTTGAGAAAGTGTCGTCCTTGATTGCTTTTGCGGTGAACGGTGACCCCGCTCACGCCAAAGCCACGCCAAGGAGAGATGGTAGAAACCCGTTTTTGAGTGAGGGGAGAGATGAAGATGAAGCTCGTGGACCCATTTGCCCCGGTTGTGGAGTCTTCATGCAAGATAAGGACCCTAACCTTCTTGGGTATTACCAACCAAGGAAGGTGAAAGTGGAAGAGTTTTCAGAAGAGGATGATGGGTTTAACGATTATGATGATGAGGTAGAAGATGATGAAGTGGAGATTTTGAATGGAAGTGAAAGTAAGCTTGGAGAAGAAAGTGAGGGGTTAACAGATGAGTTTGATTGGGATTCTGATGATTGGGAGGCTAAGTTACTGGGTGAAGATGATGATAAGTTGGATTTGGATGGGTTTGCCCCTGCAGGAGTTGGTTATGGTAACGTTACTGAGGAGTACTTGGAGaggataaagaagaagaaagtgtCAAAAGCTGAGAAGAAGAGGATGGCTAAGGAGGCTGAGAAGGTGAAAGAAGAGGTCACTGTGTGTGCTCGGTGCCATTCCTTGAGAAACTATGGCCAGGTGAAAAACCAGACCGCTGAGAATTTGATACCTGATTTTGATTTCGACAGGTTGATTTCGACGCGGTTGATGAATCCTTCTGGGAGTGGCAGTGCTACTGTTGTCGTCATGGTTGTGGATTGTGTTGATTTTGATGGTTCGTTCCCTAGAACTGCGGTGAGATCGTTGTTTCAAGCGTTGGAAAGAATGCAGGATGACTCAAAGCGGGCCAAGAAGCTGCCAAAGCTTGTTCTTGTGGCAACAAAGGTTGATCTCCTTCCATCACAGGTTTCTCCTGCGAGGTTAGATAGATGGGTTAGAAATCGTGCAAGATCTGGAGGAGCACCTAAGTTAAATGGGGTTTATACGGTCAGTGCAAGGAAGGATTTAGGTGTAAGGAATTTGTTGTCCTTTGTAAAGGATTTGGCTGGTCCTCGTGGGAATGTGTGGGTAATTGGGGCTCAAAATGCAGGGAAGTCTACTCTGATCAATGCATTTGCCAAGAAACAAGGAGCTAAAGTTACGAAGCTCACAGAAGCTCCAATTCCTGGGACAACACTTGGGATCTTGAGAATTGCGGGAATTTTGCCAGCCAAGACTAAGATGTTTGACACTCCAGGGCTCTTGCACCCATATTTAATGTCGATGAGATTGAACTGGGATGAGCAAAAGATGGTTGAGATTCGGAAGGAACTTCGGCCTCGGACATATAGAATTAAGGTAGGGCAGGCTGTACACATTGGTGGCTTGACAAGACTTGACCTTGTTGATGCCTCTGTTGAAACAATATATGTCACAGTTTGGGCATCACCAAATGTTTCTCTTCACATGgggaaaatagaaaatgctGATGAGGTTTGGAGAAATCATGTTGGTATCAGGCTGCAGCCTCCCATTGGTAACGACCGTGCTGCTGAATTAGGAACATGGCAAGAAAGGGAAGTAAAAGTGTCTGGATCTAGTTGGGAAGTCAATAGCATTGACATAGCAATAGCGGGTTTAGGTTGGTTCTCATTGGGTCTCAAAGGTGAAGCAACCACGAAATTGTGGACCTTTGACGGAGTTGAAGTAACTTTGAGAGAACCTTTGGTGCTTGACCGGGCACCATTCCTTGAGAAGCCAGGATTTTGGTTACCAAAAGCCATCTCTGATGCTATTGGCAACCAAACTAAACTTGAAGCTCAAAGAAGGAAACAACTTGAAGATGAGGATAATACGGAATACATGGGGGCAGGGGCAGAGCTATCTGCATGA 1932 0.4462 MAMLLSTIVVPSTKLVIFNNNMQERAVPSFRHFSGTSKRFEKVSSLIAFAVNGDPAHAKATPRRDGRNPFLSEGRDEDEARGPICPGCGVFMQDKDPNLLGYYQPRKVKVEEFSEEDDGFNDYDDEVEDDEVEILNGSESKLGEESEGLTDEFDWDSDDWEAKLLGEDDDKLDLDGFAPAGVGYGNVTEEYLERIKKKKVSKAEKKRMAKEAEKVKEEVTVCARCHSLRNYGQVKNQTAENLIPDFDFDRLISTRLMNPSGSGSATVVVMVVDCVDFDGSFPRTAVRSLFQALERMQDDSKRAKKLPKLVLVATKVDLLPSQVSPARLDRWVRNRARSGGAPKLNGVYTVSARKDLGVRNLLSFVKDLAGPRGNVWVIGAQNAGKSTLINAFAKKQGAKVTKLTEAPIPGTTLGILRIAGILPAKTKMFDTPGLLHPYLMSMRLNWDEQKMVEIRKELRPRTYRIKVGQAVHIGGLTRLDLVDASVETIYVTVWASPNVSLHMGKIENADEVWRNHVGIRLQPPIGNDRAAELGTWQEREVKVSGSSWEVNSIDIAIAGLGWFSLGLKGEATTKLWTFDGVEVTLREPLVLDRAPFLEKPGFWLPKAISDAIGNQTKLEAQRRKQLEDEDNTEYMGAGAELSA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1534 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 479 IPR027417 -
Ssu4g1534 643 Coils Coil 198 218 - -
Ssu4g1534 643 MobiDBLite consensus disorder prediction 621 643 - -
Ssu4g1534 643 CDD YqeH 222 434 - -
Ssu4g1534 643 MobiDBLite consensus disorder prediction 58 79 - -
Ssu4g1534 643 PANTHER GTP-BINDING PROTEIN BRASSINAZOLE INSENSITIVE PALE GREEN 2, CHLOROPLASTIC 1 631 - -
Ssu4g1534 643 Pfam 50S ribosome-binding GTPase 375 446 IPR006073 GO:0005525
Ssu4g1534 643 Gene3D - 261 437 IPR027417 -
Ssu4g1534 643 MobiDBLite consensus disorder prediction 56 79 - -
Ssu4g1534 643 PANTHER GENETIC INTERACTOR OF PROHIBITINS 3, MITOCHONDRIAL 1 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1534 Ssu-Chr4 26087816 26092682 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1534 - - gmx:100805561 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1534 4 26087816 26092682 Ssu4g1534 4 26087816 26092682 ECH