Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1533 aTGGCGCCAAAACGAAAACCTTCGTCTCCAATCTCAATCGGTAACTGCGAGATTACTGTCGAGGCTAACCGTTTCACCTGCAACTCCGACTCAAACGGCGTCGTAATCTCTCTACCCCGAAGCGGAAAGATCAAAGTGTCAGCGGCTGCAAACCATGGAAACGCTTCTGAGGATTTTAGGTCCGGAGATAAAGAACACGAGTTCGTGCTAGTTAATCCTAAAGATGTCGATGGTATTAGCAAATTCTACCTTCAGGAAGTATTGCAGATGTATACGACAGAGCTACCTGGAATGAATTATGCTGCAAATACAGGAAAACTATCGAAGTTTCTTGAGAGATGTGTTACTAATGGGAAATATCGAACACTACTTATGAAATCCGCTTCTGTTGGAAATTCAGGAAAGGTTATAGCTGCAATTACATACCAAATCATCCCTGCAGATACGGAATATGCAGAAATCCCACTTGCTGCTGTCAATGCAATCTATCAACGGAagGGTTTTGGTCATCTACTGTTTCTAGAGCTACAGAAAAGGCTTCAGAGTGTTGGCATTCGTTCTATTTTCTGCTGGGGAGACAAAGAATCAGAAGGATTTTGGATTAAACAgGGTTTTGTAGAAATAGCACAGGTGGATATCAAAGGAAGGGCCCGCAGGTTACCTGTAAAAGCTGATATTCGAAAATCACTGTGCTTTCCTGGTGGTTCAACTCTCATGGTTTGCCACCTAAGGAAAGAATTCTTAGCTGATGATGCTAACACTGTGAAGCATCTCCCCTCACAGTTTCATCAGAATTCCGTTACATCTGCCATTGCTGAAGATGAGCTGCTTGAATTTTCGCAAAATTTACACGTAGATTTGAAATTTGCAGATAAATCTCCACATAGAACAGAATCAGGTGAAAGGCAACATGAAGCTTTGGTGAAAGATGGATCTTCAACAGAATATGACAAACTCAGTGGATTTGACAGTCACAATCCTAAGCAATGCTGCAGTGGCGTTGCTCCTTTGCCCAGAGTAAATGATGATAGACAGGCCACTGGTGCAGAAAATTCACAGGATGGAATTGATGCTAATGTGAAGTATTGTTCTCAATCTACAAAAGGTGCAAAGAGGGCCTGGGAAGCCTCTTTATCCTCATTGAAGTCAAAAAGAGTGAAGGGAAGCCAGTTGGTTGACTATCAATCAGATTCTAGCTGCGGTTTTATCCTAGAGACTGATAAGGCCAATCCTTGTTTTGAAGAAGTCCCTCGTGATCCTTCGATTACAGAAAGTTCTGAAAAATGTAATGGAGATTATTTGCGTTTGGAAGCTCCCATCAACATAGAACTGTCATCAACTAAACAATGCTTTAGAGTTATGTTGATGAATATTGCTGATGATGCTAAGAAAACGCAGATTACAAAGGTGATTGAAGACCTTGGTGGAACTATATCCTATGATGGAAGTAAGACCACACACGTTGTCACAGGAAAAGTGAGAAAGACTCTGAATTTCTGTACCGCCCTCTGTTCAGGTGCTTGGGTGATCTCATCACGTTGGTTAAAAGAAAGTTTTCGTGAAGGCAGATTTGTCGATGAAGTGCCTCACATACTGAATGATACGGATTATCTACTGAAGTACAaatctgatttaaaaagtgcagTTTTCCGGGCAAAAGCTAGCCCTCATGCTTTGTTTAAGggttataatatatgtattgcaGCTCACGTTCAAACTCCTGCTAAAACATTGTCTGCAATCGTCAGGTCCGCAGGTGGTAATGTTATTAGTGGACTCGAAAAGGTAAacgaaacatcaacatcaatcTTTGTGACGTGTGAAGAAGACACAGAAGAAGCAATGACAGCTGCGAAGAAAGGTATACGAACTTTCAGTAGCGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTTGACTTGGAGGCCTGCCAGTTTGCAGAGTCCTTATAA 1953 0.4066 MAPKRKPSSPISIGNCEITVEANRFTCNSDSNGVVISLPRSGKIKVSAAANHGNASEDFRSGDKEHEFVLVNPKDVDGISKFYLQEVLQMYTTELPGMNYAANTGKLSKFLERCVTNGKYRTLLMKSASVGNSGKVIAAITYQIIPADTEYAEIPLAAVNAIYQRKGFGHLLFLELQKRLQSVGIRSIFCWGDKESEGFWIKQGFVEIAQVDIKGRARRLPVKADIRKSLCFPGGSTLMVCHLRKEFLADDANTVKHLPSQFHQNSVTSAIAEDELLEFSQNLHVDLKFADKSPHRTESGERQHEALVKDGSSTEYDKLSGFDSHNPKQCCSGVAPLPRVNDDRQATGAENSQDGIDANVKYCSQSTKGAKRAWEASLSSLKSKRVKGSQLVDYQSDSSCGFILETDKANPCFEEVPRDPSITESSEKCNGDYLRLEAPINIELSSTKQCFRVMLMNIADDAKKTQITKVIEDLGGTISYDGSKTTHVVTGKVRKTLNFCTALCSGAWVISSRWLKESFREGRFVDEVPHILNDTDYLLKYKSDLKSAVFRAKASPHALFKGYNICIAAHVQTPAKTLSAIVRSAGGNVISGLEKVNETSTSIFVTCEEDTEEAMTAAKKGIRTFSSEWFMNCVMRQELDLEACQFAESL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1533 650 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 68 213 IPR016181 -
Ssu4g1533 650 MobiDBLite consensus disorder prediction 292 312 - -
Ssu4g1533 650 CDD NAT_SF 132 191 - -
Ssu4g1533 650 Pfam BRCA1 C Terminus (BRCT) domain 558 634 IPR001357 -
Ssu4g1533 650 Pfam BRCA1 C Terminus (BRCT) domain 459 519 IPR001357 -
Ssu4g1533 650 Gene3D BRCT domain 557 649 IPR036420 -
Ssu4g1533 650 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 74 227 IPR000182 GO:0016407
Ssu4g1533 650 SUPERFAMILY BRCT domain 453 534 IPR036420 -
Ssu4g1533 650 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 4 650 - -
Ssu4g1533 650 Gene3D - 65 220 - -
Ssu4g1533 650 ProSiteProfiles BRCT domain profile. 555 639 IPR001357 -
Ssu4g1533 650 Pfam Acetyltransferase (GNAT) family 132 205 IPR000182 GO:0016407
Ssu4g1533 650 ProSiteProfiles BRCT domain profile. 453 532 IPR001357 -
Ssu4g1533 650 PANTHER N-ACETYLTRANSFERASE 4 650 - -
Ssu4g1533 650 SMART BRCT_7 557 637 IPR001357 -
Ssu4g1533 650 SMART BRCT_7 445 522 IPR001357 -
Ssu4g1533 650 Gene3D BRCT domain 441 556 IPR036420 -
Ssu4g1533 650 CDD BRCT_PAXIP1_rpt6_like 559 640 - -
Ssu4g1533 650 SUPERFAMILY BRCT domain 554 639 IPR036420 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1533 - - gmx:100806087 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1533 4 26077924 26084219 Ssu4g1533 4 26077924 26084219 ECH