Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1527 ATGGCTTCCATAATCTTCCTGTTTATCCTTCTAATCACTTGTACAGGCACAAcagATGCACAATCTGGAGTATGTTATGGAAGACTTGGCAAAGACTTGCCATCCCCCCGAGAAGTTGTGGGCCTCTACAATCAATACAACATTCACAGGATGCGAATCTATGGTCCAGACCAACAAGTCCTTGAAGCTCTAAGAGGTTCCAACATCCAGTTGCTGCTAGACATCCCAAATGACAACCTCCAAAATCTAGCTCAAAGCCAAGACAACGCAAAAAAATGGGTGCAAGACAACATCAAAAATTATGGCAATGTCAAATTCAGATACATTTCAGTGGGAAATGAAGTAAAACCCGGAGACTCAGCCGCACGGTTTCTAGTCCCCGCAATGCAAAACATTCAAAGAGCCATTTCTGAAGCTGGCCTTGGAAACCAAATAAAAGTTTCCACTGCCATTGAGACCGGTGCCTTGGCAGAATCATACCCACCATCAAGGGGATCCTTCAAGTCTGAGTATAGAGGAGCATATCTTGATGATGTCATCAGATTTCTAGTGAACAATAATTCCCCATTATTTGTTAATGTGTACACTTATTTCGGTTACATTAGCAACCCAAGGGACATTAGTCTTGATTATGCTCTTTTCAGATCTCCTTCTGTGGTCGTGAATGATGGTTCACTTGGTTACCGTAACCTTTTTGATGCTATTGTGGATGCCGTTTACTCTGCATTGGAGAGAGCAGGGGGAGGGTCAGTGAACATAGTTGTGTCAGAGAGTGGATGGCCTTCTTCTGGTGGGACAGCAACTTCACTTGACAATGCAAGAACTTACAATACAAACCTGGTTCAGCATGTGAAGGGAGGGACTCCAAAAAGGCCTGGTAGACCCATTGAAACTTATGTGTTTGCCATGTTTGATGAAAATCAGAAGCAGCCAGAGTATGAGAAATTTTGGGGGCTCTTCCTTCCAAATAAACAGCCCAAATActccattaatttaaattga 1002 0.4232 MASIIFLFILLITCTGTTDAQSGVCYGRLGKDLPSPREVVGLYNQYNIHRMRIYGPDQQVLEALRGSNIQLLLDIPNDNLQNLAQSQDNAKKWVQDNIKNYGNVKFRYISVGNEVKPGDSAARFLVPAMQNIQRAISEAGLGNQIKVSTAIETGALAESYPPSRGSFKSEYRGAYLDDVIRFLVNNNSPLFVNVYTYFGYISNPRDISLDYALFRSPSVVVNDGSLGYRNLFDAIVDAVYSALERAGGGSVNIVVSESGWPSSGGTATSLDNARTYNTNLVQHVKGGTPKRPGRPIETYVFAMFDENQKQPEYEKFWGLFLPNKQPKYSINLN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1527 333 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 14 330 IPR044965 GO:0004553|GO:0005975
Ssu4g1527 333 Pfam Glycosyl hydrolases family 17 23 331 IPR000490 GO:0004553|GO:0005975
Ssu4g1527 333 SUPERFAMILY (Trans)glycosidases 23 331 IPR017853 -
Ssu4g1527 333 Gene3D Glycosidases 22 333 - -
Ssu4g1527 333 ProSitePatterns Glycosyl hydrolases family 17 signature. 251 264 IPR000490 GO:0004553|GO:0005975
Ssu4g1527 333 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG3-RELATED 14 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1527 Ssu-Chr4 25969896 25974907 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1527 17 333 Glycoside Hydrolase AT3G57240 61.950 1.97e-139 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1527 - - gmx:547822 561.607