Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1525 atgCTTTCTTTCTTCCATGTTTTTCTTAACTCGCTCTACTTAGCTAGCTTCGCGCTGTGCTATCTCAAATCAAATGTTTATGAAGTCACAGCTGCCACCACGCGCCTCCGGTGTCTCATCAAAATGACTCTTTTGCCTCGTTTCCATTTCTTCGCTAGGCCTTTACTCTCCTCCTCTCTCCTCTTCCCCTTCCGCcagaatGGAGGTAGAGAAATAATGACTAGGATTGGCATGAATGCGTGCTTGCTTTCTTCTGCAGCTGAGGCTTCAGATTTAGAATGTGATGTGACCCATGATGATGTCAAAGCAACAGAGAAAGATAATGCACTTTGCTTGGCTGTCTCACAGCTAGCTAGCGAGTTTACCAAGGAATCAATGTTGTCTCTGCGGAAGTTTTTTGGTGTACGCCGTGCTCACGTGATATCTACAGGCTCCTTGAAGCTTGACCTAGCTCTTGGAATTGGAGGATTACCAAAGGGTAGGATTGTGGAAATTTATGGACGAGAAGCAGCTGGTAAGACTACACTTGCActtcaaattattaaagaagCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCACTGGACTTCTCACTTATGGAATCAATTGGCGTGAATACTGAAAACCTTCTTGTATCACATCCTGATTGTGCTGAAAATTTGTTAAGCATGGTTGATACATTGACAAAAAGTGGAGCTGTAGATGTGATTGTGATTGATAGTGTTGCTGCCCTCGTCCCCAAATGCGAACTTGATCAATTAGGAGTTAGCCCTAAACGAGATTTACAATCGCAAATGATGACTCAAGCATTGCGGAAAATTCACTATTCATTATCTCACTCTCAAACTCTCATTGTTTTCATTAATCAGATTAGATTGAGTCCAAAATCAGTTAAGGAATGTGGATCTGTGGAAGAAGTCACTTGCGGTGGAAATGCCTTGAGATTCTATGCAGCTGTTCGTTTGAGACTTTCAAGAATGGGATTGATCAAAACTGAGGATAAGGTAGAAGGTATTCTGATCTTTGCGCAAGTGGTAAAAAATAAACTAGCACCAGCAGCAACGAAAAGGGCTGAACTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGAGGTCTTAGATTTGGCTTGTGAACACGGAATCATTGTGAAGGATGAGGGAAGCTACTTTATTGAAGGGGGGACTTTTAATAGTAGAGATGCAGCTGAACTATTTTTGGCTACAAATGATGCCGTTTGTGACAAGTTGGTTAGGGATATGAGaagactttatttttaa 1299 0.4088 MLSFFHVFLNSLYLASFALCYLKSNVYEVTAATTRLRCLIKMTLLPRFHFFARPLLSSSLLFPFRQNGGREIMTRIGMNACLLSSAAEASDLECDVTHDDVKATEKDNALCLAVSQLASEFTKESMLSLRKFFGVRRAHVISTGSLKLDLALGIGGLPKGRIVEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVENALDFSLMESIGVNTENLLVSHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALVPKCELDQLGVSPKRDLQSQMMTQALRKIHYSLSHSQTLIVFINQIRLSPKSVKECGSVEEVTCGGNALRFYAAVRLRLSRMGLIKTEDKVEGILIFAQVVKNKLAPAATKRAELGIKFGRGFCHESEVLDLACEHGIIVKDEGSYFIEGGTFNSRDAAELFLATNDAVCDKLVRDMRRLYF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1525 432 Pfam recA bacterial DNA recombination protein 109 373 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu4g1525 432 ProSiteProfiles RecA family profile 2. 307 378 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Ssu4g1525 432 PANTHER RECA 44 432 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu4g1525 432 PANTHER DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL 44 432 - -
Ssu4g1525 432 Gene3D - 136 428 IPR027417 -
Ssu4g1525 432 PRINTS RecA protein signature 349 378 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu4g1525 432 PRINTS RecA protein signature 195 224 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu4g1525 432 PRINTS RecA protein signature 267 296 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu4g1525 432 PRINTS RecA protein signature 315 343 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu4g1525 432 PRINTS RecA protein signature 229 258 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu4g1525 432 ProSiteProfiles RecA family profile 1. 137 296 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Ssu4g1525 432 SMART AAA_5 159 333 IPR003593 -
Ssu4g1525 432 ProSitePatterns recA signature. 318 326 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Ssu4g1525 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 361 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1525 Ssu-Chr4 25943627 25949007 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1525 - - gmx:100777423 651.358