Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1521 ATGTGGAGAAGCCGGAGGCTTTTGGTGGTGTGTGGAATTCGGATCGTGGCAATGGGTGCTTTTGGTGGTAAGATGGGAATGAATGGTAATGGTGATACTGTTGCTGATCGGTGTGATCATTTAGCTGATGGCGATAAGTGTAAGAGTCGATATGGAAGTATTAATGGTATTTCTGCTACTTATAGTGATGTTCCAGCACGTAATTTATCAGATAAAATGAGGAAACTGAACATCAAACATTGTGAGGGTGCTGATGTTGCTAGAGATTCGACGAATTCACTTGCAAATGGTTGCGCTGGTTTTGTGTTTGGAGGAAGTGACAAGGTTTTTGGCTATTCTAGTGTTAGTTCAGGAACTGATGCTGATGGTCAGCAGTCTTGTGCTCGTGCTGCTTTTGAGAATATTGGTGGGCAATTTGTCAAAGCAGGTGGATTAAATGATGTTCAAAATGGAACCGCTTGTGGTTCTGCAGGAATAAATTGCTCTAAGCCATCCACTAGCCAGGAAGGTGTCAGAGGTTTCCAGTGTGACAAAATTCCAGAATGTAATGTGTCTGAAGATTCAAAAGTGAATGGAGCTGCAGCATCTTTTTCCTTCTCATCATTTGGTCTTGACTCCCATCCAACTAATTATGCTTCCATGGGCCATTCCTCAAGTGCAGATAATGATAAGGGTGATAATTCTTTTGCAAGTACTCCAGAGGCTTCCAAAGAGTCTTTTGCAGACTTCAAACCCCCAACATGGGATCCTTCTTGTTTCAAAGAAAACTTATTTCCTAAGTTAAATACGAAAATTGAATCCACACAGAAGGGCAGATCTTGTAAAGAAAAGGGGTCAAAATGTATGAGGCGAAAATTGAAGCCACATTCCTTAAATAAGAAACAGACAGGGCTAGATCATTTGTCGAAGGAAAACGGTTCACTCAAATCCCCTGATTCTTCTGGTATTCACTCACCCATGGATTTTTCGCCCTATCAGGAAACAACAGCAAGTGATCAAGATGTAAAAGCTTCAGAAGAATTAAATGATCCGCACTCAACAATTCCTACTGATTATAAAGATGAACATTTGCCTGCTGTGGGGAGAGAAGATATCAATACAACTGATCGAAGGTGTGGAGATCTGGACAATAGCAATTTATTGTCACGTAATGGAAGTTCTTCTGTTGATGATATGCATTCTTCTGGCCCTGAGATTGTCTGGCCtaatttgaaaaccaatcaATTCTGCAGTGGTGGTGTAGCAGGTGCTTCAGCAGATGCTGGGGTTGACTTCACCTCAAACACCGAAAAGCAAAAGGATGATATATTTCGTTTTGTTCATGGTGTGAATGATTCAAAGGGGAAAGATTTTGCATTTTCTGCATCATCAACTGTGGAGGGTACTCCATCATTAAAGcgtaaacaaaagaaatttaggAGGAAAATGGGGTGCAACTCTTTTGTTATCTCTCCTCATGTGAATGGAAAGTTTGTATCTTCTGTACAATTTTCACCACATACCGCTGCCAACATGTCATCACATTCTGATGTGATGGATAGGTCTCAGATAAATGACCAATTCAAGGAAGGGGATGTTGCATCATCAGATACAATTCCAGCAGCCTGTGAGAAGTGGAGACTCAGGGGGAACCAGGCCCATAAAGATGGGGATCTTTCTAAAGCTGAGGACTTCTACACACAAGGAATAAATTCTGTCCCTTCAGATGAAAGATCAGGATGCTGGGTTAAGCCTCTTTCACTGTGCTATAGTAACCGTGCAGCAACACGGATGAGTCTTGGAAGGATTAGGGAAGCTCTAGAGGATTGCATGATGGCTACTGCTCTGGACCCCTCCTTTCTGAAAATACAGATGAGAACTGCTAACTGCCACCTTTTGCTAGGGGAAATAGAAAATGCTCAACAGTGTTTTAATAAGTGCATGGAATCAGGTAGTGTTGTTTGTTTGGATCGGAGGGTTATAGTTGAAGCAGCTGAAGGTTTACAGAAGGCTCAGGAAGTGGTGAAGTGTATAAATGCTGCTGCTGAACTTTTAAAAGAGAGGACTTCTGATGCAGCTGTTACTGCTTTAGAACTAGTTTCTAAGGCATTATCAATAAGTTTATACTCAGAAAAATTGCTGCAAATGAAGGCAGAGGCTCTATGTTTGCTACAAAAGTATGGTGCAGCAATTCAGCTTTGTGAACAGAGTCAGCATCTTGGAGAAAAGAATTTTGTCTTAGCAAACAATGTAGAGAATTCCAATAGTTCCTTGTGTGATAGTTACTCAAGTGTAAAATTGTGGAGGTGCTCATTGATATCCAAGTGTTACTTTCATTTGGGAAAGCTTGAGGCATCACTTAATGTTCTTGAGAAATTACAGCACTCTGTGTCTGTCGCTGAAAAGTGTATGATTGATAACATTGAAGACTTGCTGTCGTTAGCTTCTACAATACGAGAACTTCTGGACCACAAGAGGGCaggaaatgaaaactttaaattgGGAAAGTATACGGAAGCTGTAGAGAATTACACTGCTGCTTTATCATGCAATATTAAATCACGTCCTTTTGTGGCAATATGTTTCTGCAACCGTGCTGCAGCTCATCAAGCTTTGGGCCAAATTGCTGATGCCATTGCAGACTGCAGTGTGGCTATTGCCCTTGATGGAAATTATGCAAAGGCAATTTCAAGAAGAGCCACCTTACATGAGATGGTTAGAGATTATGAACAAGCAGCTTGTGACCTCAAGAGGCTTATAGCTGTTCTTGAAACTCAATCCAATGAAAGGGCTAATCAGTCTGACTCACCCAGTGGATCAAATGGGGTTAAAGAATCAAGGCAAGCTCATCAACGTCTGCTTTCAGTGGAAGATCAAACCAAAAAGGGAACACCCTTGGACGTTTACCTCATTTTAGGAATCAAATCAGCTGATACCGCGACAGATATCAAGAAGGCATACCACAAGGCAGCTCTCAGACATCATCCAGACAAGGCTGGTCAGTTGTTGGCAAGAAGTGATGCTGGAGATGAAGGCCGAGTTTGGAAGGAAATTTCACAGGAGGTGTACAAGGATGCTGATAGGCTTTTCAAAATGATTGGAGAAGCATATGCTGTGCTTTCAGACCCAGCCAAGCGCTCGGAGTATGATTTGGAAGAGGAGATAAGGAAAGCCTATAAGCAAACTAACAGAGGTGGCACAAGCACGAGATCTTCAGATGTTTATGGGTGTGGAAGATCGTCTGATGGTTATAAATCTCCCTCTGACAGAACTTCTAACAGACGATATGGACGGGATCATTGGAAGACATATGGACATTCATATTCTCGATGGTAA 3315 0.4127 MWRSRRLLVVCGIRIVAMGAFGGKMGMNGNGDTVADRCDHLADGDKCKSRYGSINGISATYSDVPARNLSDKMRKLNIKHCEGADVARDSTNSLANGCAGFVFGGSDKVFGYSSVSSGTDADGQQSCARAAFENIGGQFVKAGGLNDVQNGTACGSAGINCSKPSTSQEGVRGFQCDKIPECNVSEDSKVNGAAASFSFSSFGLDSHPTNYASMGHSSSADNDKGDNSFASTPEASKESFADFKPPTWDPSCFKENLFPKLNTKIESTQKGRSCKEKGSKCMRRKLKPHSLNKKQTGLDHLSKENGSLKSPDSSGIHSPMDFSPYQETTASDQDVKASEELNDPHSTIPTDYKDEHLPAVGREDINTTDRRCGDLDNSNLLSRNGSSSVDDMHSSGPEIVWPNLKTNQFCSGGVAGASADAGVDFTSNTEKQKDDIFRFVHGVNDSKGKDFAFSASSTVEGTPSLKRKQKKFRRKMGCNSFVISPHVNGKFVSSVQFSPHTAANMSSHSDVMDRSQINDQFKEGDVASSDTIPAACEKWRLRGNQAHKDGDLSKAEDFYTQGINSVPSDERSGCWVKPLSLCYSNRAATRMSLGRIREALEDCMMATALDPSFLKIQMRTANCHLLLGEIENAQQCFNKCMESGSVVCLDRRVIVEAAEGLQKAQEVVKCINAAAELLKERTSDAAVTALELVSKALSISLYSEKLLQMKAEALCLLQKYGAAIQLCEQSQHLGEKNFVLANNVENSNSSLCDSYSSVKLWRCSLISKCYFHLGKLEASLNVLEKLQHSVSVAEKCMIDNIEDLLSLASTIRELLDHKRAGNENFKLGKYTEAVENYTAALSCNIKSRPFVAICFCNRAAAHQALGQIADAIADCSVAIALDGNYAKAISRRATLHEMVRDYEQAACDLKRLIAVLETQSNERANQSDSPSGSNGVKESRQAHQRLLSVEDQTKKGTPLDVYLILGIKSADTATDIKKAYHKAALRHHPDKAGQLLARSDAGDEGRVWKEISQEVYKDADRLFKMIGEAYAVLSDPAKRSEYDLEEEIRKAYKQTNRGGTSTRSSDVYGCGRSSDGYKSPSDRTSNRRYGRDHWKTYGHSYSRW 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1521 1104 Gene3D DnaJ domain 947 1065 IPR036869 -
Ssu4g1521 1104 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 23 1104 - -
Ssu4g1521 1104 Gene3D Tetratricopeptide repeat domain 813 932 IPR011990 GO:0005515
Ssu4g1521 1104 Gene3D Tetratricopeptide repeat domain 534 650 IPR011990 GO:0005515
Ssu4g1521 1104 ProSiteProfiles dnaJ domain profile. 960 1046 IPR001623 -
Ssu4g1521 1104 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 23 1104 - -
Ssu4g1521 1104 PRINTS DnaJ domain signature 962 980 IPR001623 -
Ssu4g1521 1104 PRINTS DnaJ domain signature 980 995 IPR001623 -
Ssu4g1521 1104 PRINTS DnaJ domain signature 1018 1038 IPR001623 -
Ssu4g1521 1104 SUPERFAMILY TPR-like 817 915 IPR011990 GO:0005515
Ssu4g1521 1104 CDD DnaJ 960 1035 IPR001623 -
Ssu4g1521 1104 MobiDBLite consensus disorder prediction 277 291 - -
Ssu4g1521 1104 MobiDBLite consensus disorder prediction 268 353 - -
Ssu4g1521 1104 MobiDBLite consensus disorder prediction 920 941 - -
Ssu4g1521 1104 SMART dnaj_3 959 1038 IPR001623 -
Ssu4g1521 1104 MobiDBLite consensus disorder prediction 1054 1069 - -
Ssu4g1521 1104 MobiDBLite consensus disorder prediction 1054 1090 - -
Ssu4g1521 1104 ProSitePatterns Nt-dnaJ domain signature. 1023 1042 IPR018253 -
Ssu4g1521 1104 SUPERFAMILY Chaperone J-domain 925 1042 IPR036869 -
Ssu4g1521 1104 MobiDBLite consensus disorder prediction 301 332 - -
Ssu4g1521 1104 Coils Coil 661 681 - -
Ssu4g1521 1104 MobiDBLite consensus disorder prediction 333 353 - -
Ssu4g1521 1104 MobiDBLite consensus disorder prediction 213 243 - -
Ssu4g1521 1104 MobiDBLite consensus disorder prediction 920 942 - -
Ssu4g1521 1104 Pfam DnaJ domain 960 1043 IPR001623 -
Ssu4g1521 1104 SMART tpr_5 886 919 IPR019734 GO:0005515
Ssu4g1521 1104 SMART tpr_5 614 647 IPR019734 GO:0005515
Ssu4g1521 1104 SMART tpr_5 580 613 IPR019734 GO:0005515
Ssu4g1521 1104 SMART tpr_5 814 847 IPR019734 GO:0005515
Ssu4g1521 1104 SMART tpr_5 852 885 IPR019734 GO:0005515
Ssu4g1521 1104 SMART tpr_5 536 569 IPR019734 GO:0005515
Ssu4g1521 1104 SMART tpr_5 704 737 IPR019734 GO:0005515
Ssu4g1521 1104 MobiDBLite consensus disorder prediction 213 235 - -
Ssu4g1521 1104 SUPERFAMILY TPR-like 533 737 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1521 Ssu-Chr4 25810782 25821740 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1521 K09527 - gmx:100809278 1725.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1521 4 25810782 25821740 Ssu4g1521 4 25810782 25821740 ECH