Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1517 ATGGTGGGAAGCATTATGGGAGTGGTTCATAATGCATACTCAAATGGAAGTGTTGGTGTTCAGAATTGTAATGGGGTGGAAGAGAAGCTTGATGGTTTGAGAAGGCTTATTGGGAAGGCTGATGGTGATCCCTTGAGAATTGTGAGTGTTGGAGCTGGTGCTTGGGGCAGTGTTTTTGCAGCTTTGCTACAAGACACTTATGGCCAATTCAGGGACAAGATACAAGTCAGGATATGGAGAAGAGCAGGAAGGGCAGTGGATAGAGGCACTGCAGAACATCTCTTTGAAGTCATCAACTCAAGGGAGGATGTGTTGAGGAGGTTGATCCGGCGTTGCGCTTATCTGAAGTATGTTGAGGCAAGGCTTGGGGATAGGACACTCTTTGCTGATGAGATTCTCAAAGATGGCTTTTGCTTGAACATGATTGATACCCCACTCTGTCCTTTGAAGGTTGTCACAAACCTGCAGGAAGCTGTTTGGGATGCTGATATTGTGGTCAATGGTTTACCTTCAACAGAAACACGTGAGATCTTTGAAGAGATAAGTAAGTATTGGAAGGAGAGGATCACAGTGCCTATAATTATCTCTTTGTCAAAAGGTATAGAGGCTGCATTGGAGCCTGTTCCCCATATTATAACTCCCACAATGATGATTAACCAAGCAACTGGAGTGCCTATGGAGAACATACTCTATCTTGGGGGTCCAAATATTGCCTCAGAAATCTACAACAAGGAGTATGCCAATGCAAGAATATGTGGAGCTGAGAAATGGAGGAAACCTCTGGCAAAGTTTTTGCGACAGCCACACTTTATTGTCTGGGACAACAGTGACCTCATCACCCATGAGGTCATGGGGGGCTTGAAAAATGTCTATGCAATTGGAGCTGGAATGGTAGCAGCCCTTACCAATGAGAGTGCTACAAGCAAATCTGTGTACTTTGCACACTGTACATCGGAAATGATATTTATCACTCACTTGTTGGCTGAAGAACCTGAGAAACTTGCAGGGCCATTACTGGCTGACACTTATGTGACCTTGTTAAAAGGCCGTAACGCTTGGTACGGCCAGATGTTAGCTAAGGGTCAACTAAGACCAGACATGGGTGACAGCATTAGTGGCAAAGGAATGATTCAgGGTGTGTCTGCAGTGGAGGCATTCTTTGAACTTCTGAGCCAGTCTAGCCTGAATGTGTTGCATCCTGAAGAAAACAAGCCTGTTGCTCCTGTAGAGCTCTGCCCTATCTTGAagacattatacaaaatattgatATCCAGGGAACAGTCATCACAAGCTATTCTGAAAGCCTTGAGGGATGAAAATCTGAATGATCCTCGCGAACGAATTGAGATTGCACAAAGCCACGTTTTCTACAAGCCTTCACTTCTTGGACAACCATGA 1398 0.4435 MVGSIMGVVHNAYSNGSVGVQNCNGVEEKLDGLRRLIGKADGDPLRIVSVGAGAWGSVFAALLQDTYGQFRDKIQVRIWRRAGRAVDRGTAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLFADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREIFEEISKYWKERITVPIIISLSKGIEAALEPVPHIITPTMMINQATGVPMENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGQLRPDMGDSISGKGMIQGVSAVEAFFELLSQSSLNVLHPEENKPVAPVELCPILKTLYKILISREQSSQAILKALRDENLNDPRERIEIAQSHVFYKPSLLGQP 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1517 465 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 277 IPR036291 -
Ssu4g1517 465 PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)] 1 465 - -
Ssu4g1517 465 Gene3D - 27 108 - -
Ssu4g1517 465 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 277 432 IPR008927 -
Ssu4g1517 465 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 49 66 IPR006168 GO:0004367|GO:0006072|GO:0009331
Ssu4g1517 465 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 270 294 IPR006168 GO:0004367|GO:0006072|GO:0009331
Ssu4g1517 465 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 149 251 IPR011128 GO:0016616|GO:0046168|GO:0051287
Ssu4g1517 465 PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE 1 465 - -
Ssu4g1517 465 Gene3D - 139 273 - -
Ssu4g1517 465 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 277 431 IPR006109 GO:0004367|GO:0005975
Ssu4g1517 465 Gene3D - 277 437 IPR013328 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1517 Ssu-Chr4 25732754 25738442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1517 1 465 Acyl Lipid Metabolism Gene Families AT2G41540 87.097 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1517 K00006 - gmx:100810871 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1517 4 25732754 25738442 Ssu4g1517 4 25732754 25738442 ECH
Ssu4g1517 4 25732754 25738442 Ssu7g2869 7 60950106 60952687 PCT