Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1498 ATGGGAGCTGCGTGGAGGCAGTTGAAGGTTATGCTCCGCAAGAACTGGCTTCTCAAAATTCGTCACCCTTACGTTACTGCCGCTGAGATGTTGCTCCCCACGATTGTGTTGTTGCTGTTAGCAGCAGTAAGGACACAAGTGGATACACAAATTCATCCAGCTCAACCGCACATTCAAAAAGATATGTTTGTGGAAGTGGGCAAAGGTATATCCCCCAACTTTCAACAAGTTTTGGTGTCGATGTTGGACATTGGAGAGTATTTAGCTTTTGCACCGGATACCAATGAGACAAAGCTGTTTATAGATGTAGTGTCGATAAAATTTCCACTCCTGAAGCTAGTTAGTAGAGTATACAAAGATGAGGTAGAGTTGGAAACCTACATCCGCTCAGATGCTTATGGTACCTGCAATCAAGCAAGGAATTGTTCAAATCCCAAAATTAAAGGAGCAGTTGTGTTTTATGAACAAGGCCCTCAGTCATTTGATTATAGCATACGCCTCAATCATACATGGGCTTTCTCCGGTTTTCCAGATGTTACAACAATAATGGATACAAATGGCCCTTTTCTTAATGACTTGGAACTTGGTGTTAGTGCTGTACCAACAATGCAATACAGCTTCAGTGGGTTTTTGACTCTCCAGCAAATGGTTGattcattcataatattaaTAGCGCAGCAGTCTGACTTAAATTTCAATGCTGAAAGTCTAGAGCTTCCTCTTCCAGGCTTCTATGACACTAATTTCTCTTTGAAAAGTTCATGGACTCAGTTTATCCCTGCTCAAATACGAATAGCTCCATTTCCCACTCGAGAGTACACTGATGATCAGTTCCAGTCAATCATAAAGAAAGTCATGGGAATATTGTACTTATTGGGGTTTCTCTACCCAATTTCTCGCTTAATCAGTTATTCTGTGTTTGAGAAGGAACAGAAGATTAAAGAAGGACTCTATATGATGGGTCTGAAAGATGGTATATTTCATCTTTCTTGGTTTATCACTTATGCTTTGCAGTTTGCAATTTCTTCTGGGATCCTTACAGCTTGCACCGTggataatttattcaagtataGTGACAAGACACTGGTGTTTGCATACTTTTTCGTTTTTGGGCTTAGTGCAATCATGCTTTCATTCTTTATATCAACGTTTTTCAAACGGGCCAAAACAGCTGTAGCTGTTGGAACTCTGTCTTTTCTTGGAGCCTTTTTCCCTTATTACACTGTCAATGATGAGGGAGTTTCAATGATCTTTAAGGTTATTGCTTCTTTACTTTCACCTACGGCCTTTGCTTTGGGTTCAATCAACTTTGCTGATTATGAGCGTGCTCATGTTGGACTTCGTTGGAGCAACATATGGCGGGAATCATCTGGAGTTAACTTTTTTGCATGTCTTCTGATGATGATACTTGATACACTGATATATTGTGTGATTGGACTTTATTTTGATAAGGTTCTTCCAAGGGAGTATGGACAGAAATACCCATGGagctttatttttcaaaagaacttctggaggaagaaaaaaattgtaaaacattGTTCCTCCggttttaaagttaaaatgtcTGGTAATAATTCTGAGTCAGAAGGGAATCTGTCAGGGAAATATACTTCGAAACCTGCCATTGAAGCAATAAGCTTAGACATGAAACAACAGGAGCTTGATAGCAGgTGCATTCAAATCAGGAATTTGCATAAAGTGTATGCTACGAAGAAAGGAGATTGCTGTGCAGTTAACTCATTACAACTGACACTCTATGAAAACCAGATTCTTGCCCTTCTAGGACATAATGGTGCTGGGAAAAGCACGACAATCTCAATGCTTGTTGGTCTGCTTCCTCCTACTTCTGGGGATGCATTGGTGTTTGGAAAGAACATTGTATCGGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGCCCACAACATGATATACTCTTTCCTGAATTAACAGTTAGGGAGCATTTAGAACTATTTGCCATATTAAAGGGTGTGGAGGAACACTCATTGGACAATGCTGTTATTAATATGGCTGATGAGGTGGGCCTGGCTGATAAAATCAACAGTATGGTGAGAGCTCTTTCTGGTGGCATGAAGAGGAAATTGTCTCTTGGAATTGCATTGATTGGAAACAGTAAGGTTATAGTCCTTGATGAACCTACTAGTGGAATGGATCCATACTCAATGCGCTTGACTTGgcagttaataaaaaaaattaagaagggCAGGATAATTTTGCTAACAACACATTCTATGGATGAAGCAGATGAACTAGGTGACCGGATAGCTATCATGGCCAACGGTTCTCTGAAATGCTGTGGAAgCTCTCTTTTCTTGAAACATCATTATGGAGTTGGTTATACTCTAACTCTTGTGAAGTCAGCTCCTACTGCTTCTATAGCTGGTGATATAGTATACCGTCATGTTCCATCTGCAACATGTGTAAGCGAGGTTGGAACTGAGATTTCTTTCAGGCTTCCTATGGCATCCTCATCAGCCTTTGAAAGGATGTTTAGGGAAATTGAAGGTTGCATGAAAAAACCAGTTTCAAACATGGAATTGAGTGGCAATGGTGACAAAGACAGTTTTGGTATCGAAAGCTATGGTATATCGGTAACAACCCTGGAGGAGGTATTTTTGAGAGTTGCGGGATGTGACTATGATGAAGTTGAatgttttgaagaaaataacCATTCCCTTATGTCAGACTCTGTGGCTTCTCTTCCTACTATTGATCATCCACCCACAAAAATAAGTTGTCTTAAAATTTTGGGAAATTATAAGAAGATTCTTGGTTTCATGTCTACCATGTTGGGAAGAGCTTGTGGCTTAATTTTTGCTACAGTTCTTAGTTTTATCAACTTCTTGGGTATGCAGTGCTGTAGCTGTTGTCTTACTAGGTCAACATTTTGGCAACATTCTAAAGCCTTAATCATTAAAAGGGCAATATCTGCTCGGAGAGATCACAAAACAGTTATTTTCCAGCTAATGATTCCTACTCTCTTCTTGTTTATTGGTCTTCTATTTCTCAAGCTCAAGCCTCATCCTGATCAGCAATCACTGACCCTTTCAACTTCTCATTTTAATCCTCTATTGAGCGGTGGGGGTGGGGGAGGTCCAATTCCGTTTAATTTATCTTTGCCAATTGCTGAAAAGGTAGCACAAAATGTCAAAGGAGGGTGGATTCAGAAGTTCAAGCCAAGTTCATACAGATTCCCCGATTCAGAAAAGGCATTGGCTGATGCAGTGGAAGCGGCAGGGCCAAGTCTGGGACCTGCTCTACTTTCAATGAGTGAATTTTTGATGTCTAGCTTTAATGAATCCTACGAATCTAGGTATGGGGCAATTGTGATGGATGATCTGAATAATGATGGAAGCTTAGGATACACTGTATTACACAACTATTCTTGTCAACATGCTGCTCCCACCTTTATCAATTTGATGAATTCAGCAATTCTCAGGCTTGCAACTCATGACTTAAATATGACAATTCAAACACGCAACCACCCTCTACCAACGACACAAAGCCAGCACTTACAACGTCATGACCTGGATGCCTTCTCTGCTGCAATTATTGTCaatattgctttctcttttataCCTGCCTCATTTGCTGTTTCAATTGTTAAGGAACGTGAAGTGAAAGCTAAGCAGCAACAACTAATCAGTGggGTTTCTGTCCTTTCATATTGGGTTTCTACATTTATCTGGGACTTTGTGAGCTTCTTGTTTCCGGCCTCTTTTGCCATAGTTCTCTTTTACATCTTTGGTCTGGATCAGTTTGTAGGAGGGGTTTCTTTGTTACCAACAATCCTCATGCTTTTGGAATATGGGCTTGCAATTGCATCATCAACTTATTGccttacatttttcttttttgaccaTACCATGGCTCAGAACGTGGTTCTCCTGATCCACTTTTTCACCGGATTGATTCTAATGGTTATCTCATTCGTTATGGGACTCATGCCATCAACAATGAGTGCCAATTCTTTTCTTAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGTCTTGCTTCATTGGCTCTTTTGCGGCaaggaatgaaagataaaacAAGTGATGGGGTGTTTGATTGGAATGTTACCGGTGCTTCCATCTGTTATCTTGCTGTTGAGAGCTTTTGTTACTTTCTGTTGACCCTTGCACTTGAAATTTTTCCTTCTCTCCAATTGACTTCATTCATGATCAAGAAGTGGTGgggaaaaattaatatcttccgGCATGATACTCGTTATTCAGAACCTCTGTTAGAACCTTCCTCTGAAACTGTTGCTATGGACTTCGATGAAGATGTAGATGTAAAAACAGAGAGAAATAGAGTACTTTCAGGTTCCCTTGACAATTCCATTATCTACCTGTGTAATCTTCGTAAGGTATATTTTGAGGAGAAGCAACATGGGAGAAAGGTTGCAGTAGATTCTTTAACTTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGAACGAATGGAGCTGGAAAGACCACAACTCTCTCTATGCTTTGCGGTGAAGAATCTCCTTCTGATGGAACTGCTTTTATTTTTGGCAAAGATATATGTTCCCATCCCAAGGCTGCTCGTCGATAcATTGGATATTGTCCACAATTTGATGCTCTATTGGAATACTTAACTGTTCAAGAGCATCTTGAGCTTTATGCTAGAATAAAAGGTGTTCCagattttgaaatagaaaatGTCGTTATGGAAAAGTTGGCAGAGTTTGCCTTATTGAAGCATGCTAATAAACCATCATTTTCACTTAGTGGagggaataaaagaaaactctCTGTTGCAATTGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAGCCATCCACAGGTATGGATCCCATTGCCAAAAGGTTCATGTGGGATGTAATATCTAGGATCTCAACAAGACGAGGAAAGACTGCAGTAATTCTTACTACCCACAGCATGAATGAAGCTCAAGCCTTATGTACCAGAATAGGGATAATGGTTGGTGGACGATTACGATGCATTGGAAGTCCACAGCATCTAAAAACTAGATTTGGGAATCATCTTGAACTAGAGGTGAAACCTACTGAAGTTAGTTCCGTGGACTTGCACGCCCTCTGCCAAGCCATTCAAGAAAGACTTCTTGATGTGCCTTCTCATCCTAGAAGCTTACTTAATGACCTTGAAATTTGCATTGGGGGCACTGATTCCGCCACATCAGGAAATACCTCCATTGCAGAGATTAGCTTGACACGAGAAATGATAGGCATAATTGGGCGCTGGCTTGACAATGAAGAAAGAGTAAAGACACTAATCTCTTGTACACCTGTCTGTGATGGAGGTTCTCAGGAACAGTTATCAGAACAACTGTTTCGAGATGGTGGTATTCCATTGCCAGTATTTTCTGAGTGGTGGCTGTCTAAACAAAAATTCTCAGAAATTGATTCATTTATTCTCTCTTCATTTCGTGGAGCAAGATGCCAAGGGTGCAATGGTTTGAGCATCAGATATCAGTTACCTTATAATGAGGATTTTTCCCTGGCAGatgtttttggagttcttgaaAGAAACAGAAATAGATTAGGGATTGCGGAGTACAGCATCAGCCAATCAACTCTGGAGacaatatttaatcattttgcGGCTAATCCATGA 5676 0.3853 MGAAWRQLKVMLRKNWLLKIRHPYVTAAEMLLPTIVLLLLAAVRTQVDTQIHPAQPHIQKDMFVEVGKGISPNFQQVLVSMLDIGEYLAFAPDTNETKLFIDVVSIKFPLLKLVSRVYKDEVELETYIRSDAYGTCNQARNCSNPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDVTTIMDTNGPFLNDLELGVSAVPTMQYSFSGFLTLQQMVDSFIILIAQQSDLNFNAESLELPLPGFYDTNFSLKSSWTQFIPAQIRIAPFPTREYTDDQFQSIIKKVMGILYLLGFLYPISRLISYSVFEKEQKIKEGLYMMGLKDGIFHLSWFITYALQFAISSGILTACTVDNLFKYSDKTLVFAYFFVFGLSAIMLSFFISTFFKRAKTAVAVGTLSFLGAFFPYYTVNDEGVSMIFKVIASLLSPTAFALGSINFADYERAHVGLRWSNIWRESSGVNFFACLLMMILDTLIYCVIGLYFDKVLPREYGQKYPWSFIFQKNFWRKKKIVKHCSSGFKVKMSGNNSESEGNLSGKYTSKPAIEAISLDMKQQELDSRCIQIRNLHKVYATKKGDCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFAILKGVEEHSLDNAVINMADEVGLADKINSMVRALSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIAGDIVYRHVPSATCVSEVGTEISFRLPMASSSAFERMFREIEGCMKKPVSNMELSGNGDKDSFGIESYGISVTTLEEVFLRVAGCDYDEVECFEENNHSLMSDSVASLPTIDHPPTKISCLKILGNYKKILGFMSTMLGRACGLIFATVLSFINFLGMQCCSCCLTRSTFWQHSKALIIKRAISARRDHKTVIFQLMIPTLFLFIGLLFLKLKPHPDQQSLTLSTSHFNPLLSGGGGGGPIPFNLSLPIAEKVAQNVKGGWIQKFKPSSYRFPDSEKALADAVEAAGPSLGPALLSMSEFLMSSFNESYESRYGAIVMDDLNNDGSLGYTVLHNYSCQHAAPTFINLMNSAILRLATHDLNMTIQTRNHPLPTTQSQHLQRHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKQQQLISGVSVLSYWVSTFIWDFVSFLFPASFAIVLFYIFGLDQFVGGVSLLPTILMLLEYGLAIASSTYCLTFFFFDHTMAQNVVLLIHFFTGLILMVISFVMGLMPSTMSANSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGASICYLAVESFCYFLLTLALEIFPSLQLTSFMIKKWWGKINIFRHDTRYSEPLLEPSSETVAMDFDEDVDVKTERNRVLSGSLDNSIIYLCNLRKVYFEEKQHGRKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARRYIGYCPQFDALLEYLTVQEHLELYARIKGVPDFEIENVVMEKLAEFALLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLHALCQAIQERLLDVPSHPRSLLNDLEICIGGTDSATSGNTSIAEISLTREMIGIIGRWLDNEERVKTLISCTPVCDGGSQEQLSEQLFRDGGIPLPVFSEWWLSKQKFSEIDSFILSSFRGARCQGCNGLSIRYQLPYNEDFSLADVFGVLERNRNRLGIAEYSISQSTLETIFNHFAANP 1891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1498 1891 ProSitePatterns ABC transporters family signature. 1600 1614 IPR017871 GO:0005524
Ssu4g1498 1891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1476 1693 IPR027417 -
Ssu4g1498 1891 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1463 1701 IPR003439 GO:0005524
Ssu4g1498 1891 CDD ABC_subfamily_A 1463 1689 - -
Ssu4g1498 1891 Pfam ABC transporter 1485 1627 IPR003439 GO:0005524
Ssu4g1498 1891 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1317 1658 - -
Ssu4g1498 1891 SMART AAA_5 1493 1680 IPR003593 -
Ssu4g1498 1891 SMART AAA_5 588 770 IPR003593 -
Ssu4g1498 1891 CDD ABC_subfamily_A 560 781 - -
Ssu4g1498 1891 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 560 793 IPR003439 GO:0005524
Ssu4g1498 1891 Pfam ABC-2 family transporter protein 211 481 - -
Ssu4g1498 1891 Pfam ABC-2 family transporter protein 991 1393 - -
Ssu4g1498 1891 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1653 1888 - -
Ssu4g1498 1891 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 5 1317 - -
Ssu4g1498 1891 Gene3D - 1457 1705 IPR027417 -
Ssu4g1498 1891 Gene3D - 532 796 IPR027417 -
Ssu4g1498 1891 Pfam ABC transporter 580 723 IPR003439 GO:0005524
Ssu4g1498 1891 ProSitePatterns ABC transporters family signature. 695 709 IPR017871 GO:0005524
Ssu4g1498 1891 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1653 1888 IPR026082 GO:0016021|GO:0055085|GO:0140359
Ssu4g1498 1891 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 5 1317 IPR026082 GO:0016021|GO:0055085|GO:0140359
Ssu4g1498 1891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 798 IPR027417 -
Ssu4g1498 1891 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1317 1658 IPR026082 GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1498 Ssu-Chr4 25311930 25392535 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1498 540 796 Calmodulin-binding Proteins AT2G36910 24.815 9.27e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1498 K05643 - gmx:100803263 3542.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1498 4 25311930 25392535 Ssu4g1498 4 25311930 25392535 ECH