Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1496 ATGGCCAGCACCGCGACTCACTATCTCCAAGTCGCCGGAGCCGCCGAGTCGACTCACCGGCGGGCCTCCATTTCGTGCAAGAAGAAATCGAACCAGCCGGTATTCAAGGAAACGAAGCAAGGCTTCGTGGACTACGACCGAGGCCAGCACGAGGTCTCCACCAACGTCACCGGCCTCCGCAAGGACGACATCCCCGCCCGCTACCGCCTCCGCGTCGCCGGAAACCGCTTCCAGATGGACTGGACGGTGTCCGAGGTGGCCGGCCTCATCCTCTCCCTCGACCTCGCCGACGACGTCGACGTCGTCGGCCTACTCAACCGCTGGGTAGGCCGCTTCGCGCGCAAGAATTTTCCCTTCCTCATCAAGGAGTTGACGCAGAGAGGGGCCGTTGAACACTGTAACCTCGTGTTCCGGTGGATGAAGAACCAGCGGAATTACTGTGCGCGCACCGATGTGTACAACATGATGATTAGGTTGCACGCTCGGCACAATCGGACGGACCAGGCGCGTGGATTGTTTTTCGAGATGCAGGAATGGAGATGTAAGCCTGATGTTGAGACTTACAATGCTCTTATCCATGCGCATGGTCGAGCTGGACAGTGGCGTTGGGCAATGAATATCATGGATGACATGCTGCGTGCAGCTATTCCACCAAGTCGATCAACTTATAACAACTTGATAAATGCTTGTGGATCTAGTGGGAATTGGAAAGAAGCACTTAACGTTTGCAAGAAAATGACAGACAATGGTGTTGGGCCTGATCTTGTTACTCACAATATTATTCTATCCGCATTTAAAAGTGGGGCTCAGTATTTGAAAGCTTTATCTTATTTTGAACTGATGAAGGGAACTCATATTCGTCCTGACACAACTACGCTTAATATTGTTATACATTGTCTAGTCAAGCTTCGACAATATAACAAAGctattgacatttttaattcCATGAGGGAGAAGAAGTCAGAATGTAACCCTGATGTTGTTACATTCACTAGTATCATGCACTTGTATTCTGTGTGTGGGCAAGTTGAAAATTGTGAGGCTGCATTCAATATGATGCTTGCGGAAGGGCTGAAACCAAATATAGTCTCGTACAATGCACTAATAGGTGCATATGCTGCTCGCGGGATGGACGATGAGGCACTTTTGGTTTTCAATGAGATAACACAAAATGGTTTCCGCCCTGATATTGTATCTTATACATCTCTCCTTAATGCTTATGGAAGATCACAAAAGCCCCAAAAAGCAAGggaaatatttgatatgatgAAGAGAAACAAGTTGAAGCCAAACCTTGTCAGTTACAATGCACTGATTGATGCGTATGGATCCAATGGTTTGCTGGCAGATGCAATTGAAATCTTGCGAGAAATGGAACAAGATGGAATTCATCCAAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCAGAAGGTGAAGATTGACACAGTGCTAACTGCAGCTGAGATGAGAGGAATTAAATTGAACACAGTTGCATATAATTCAGCTATAGGAAGCTGTATGAATGTAGGGGAATATGACAAAGCTATAGGCTTGTATAAATCTAtgaggaagagaaaaattaaaactgatTCTGTTACTTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCTATCTTTTATGGAAGAAATGATGCACCTAAAACTTCCTTTGTCCAAAGAGGTCTACTCATCTGTGATATGTGCCTATAGCAAACAGGGCCAAATTGTAGAAGCAGAATCTACATTCAACTTGATGAAATCATCTGGTTGCTACCCTGATGTGGTTACATACACCACCATGCTTGATGCTTACAATGCAGctgAGAATTGGGAGAAGGCTTATGCACTCTTTGAAGAAATGGAAGCAAGCGGCATCAAGCTAGATACTATTGCCTGTGCAGCTCTAATGAGATCTTTTAATAAAGGTGGCCAACCAGGAAGGGTTCTTAGTCTTGCAGAAAgtatgagagaaaaagaaattccTTTCAGTGATAccatattttttgaaatggtATCTGCCTGTAGCATATTACAAGATTGGAGGACAGCTGTTGATATGATCAAGTACATAGAGCACTCACTTCCTGTAATTTCATCCGGATGTTTGAATCAGTTCCTGCATTCTTTAggaaaaagtggaaaaattgaAACTATGTTGAAGTTATTCTTCAAAATGTTGGCATCAGGTGCTGATGTTAACTTAACCACTTACTCTATTTTATTGAAGAACCTTTTATCATCTGGAAATTGGAGGAAATATTTAGAGGTATTGCAATGGATGGAGGATGCAGGAATTCATCCATCAAATGAAATGTACCTTGATATATTCTCCTTTTCACAAAAATGCTGCGGGGATGAAAATGCTGCTGTCATAAAAGAAAGACTTGAAtccttgaaaagaaaatttggggATCAAATATCTACAAGCCAGCCATGTGAATTTCCTGTTCTTAGTTGA 2496 0.4159 MASTATHYLQVAGAAESTHRRASISCKKKSNQPVFKETKQGFVDYDRGQHEVSTNVTGLRKDDIPARYRLRVAGNRFQMDWTVSEVAGLILSLDLADDVDVVGLLNRWVGRFARKNFPFLIKELTQRGAVEHCNLVFRWMKNQRNYCARTDVYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNALIHAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIILSAFKSGAQYLKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYNKAIDIFNSMREKKSECNPDVVTFTSIMHLYSVCGQVENCEAAFNMMLAEGLKPNIVSYNALIGAYAARGMDDEALLVFNEITQNGFRPDIVSYTSLLNAYGRSQKPQKAREIFDMMKRNKLKPNLVSYNALIDAYGSNGLLADAIEILREMEQDGIHPNVVSICTLLAACGRCSQKVKIDTVLTAAEMRGIKLNTVAYNSAIGSCMNVGEYDKAIGLYKSMRKRKIKTDSVTYTVLISGCCKMSKYGEALSFMEEMMHLKLPLSKEVYSSVICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTTMLDAYNAAENWEKAYALFEEMEASGIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSACSILQDWRTAVDMIKYIEHSLPVISSGCLNQFLHSLGKSGKIETMLKLFFKMLASGADVNLTTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSNEMYLDIFSFSQKCCGDENAAVIKERLESLKRKFGDQISTSQPCEFPVLS 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Ssu4g1496 831 Pfam Pentatricopeptide repeat domain 448 478 IPR002885 -
Ssu4g1496 831 Pfam Pentatricopeptide repeat domain 324 373 IPR002885 -
Ssu4g1496 831 Pfam Pentatricopeptide repeat domain 734 783 IPR002885 -
Ssu4g1496 831 Pfam Pentatricopeptide repeat domain 384 445 IPR002885 -
Ssu4g1496 831 Pfam Pentatricopeptide repeat domain 629 673 IPR002885 -
Ssu4g1496 831 PANTHER OS07G0213300 PROTEIN 22 789 - -
Ssu4g1496 831 Pfam PPR repeat 152 181 IPR002885 -
Ssu4g1496 831 Pfam PPR repeat 292 319 IPR002885 -
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Ssu4g1496 831 Gene3D Tetratricopeptide repeat domain 653 823 IPR011990 GO:0005515
Ssu4g1496 831 Gene3D Tetratricopeptide repeat domain 114 269 IPR011990 GO:0005515
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Ssu4g1496 831 Pfam PPR repeat family 183 230 IPR002885 -
Ssu4g1496 831 Pfam PPR repeat family 501 549 IPR002885 -
Ssu4g1496 831 Pfam PPR repeat family 574 617 IPR002885 -
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Ssu4g1496 831 Gene3D Tetratricopeptide repeat domain 270 389 IPR011990 GO:0005515
Ssu4g1496 831 SUPERFAMILY TPR-like 289 632 IPR011990 GO:0005515
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 746 780 IPR002885 -
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Ssu4g1496 831 Gene3D Tetratricopeptide repeat domain 460 566 IPR011990 GO:0005515
Ssu4g1496 831 Gene3D Tetratricopeptide repeat domain 390 459 IPR011990 GO:0005515
Ssu4g1496 831 Gene3D Tetratricopeptide repeat domain 567 636 IPR011990 GO:0005515
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Ssu4g1496 831 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 22 789 - -
Ssu4g1496 831 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Ssu4g1496 831 TIGRFAM PPR: pentatricopeptide repeat domain 363 397 IPR002885 -
Ssu4g1496 831 TIGRFAM PPR: pentatricopeptide repeat domain 152 185 IPR002885 -
Ssu4g1496 831 TIGRFAM PPR: pentatricopeptide repeat domain 503 536 IPR002885 -
Ssu4g1496 831 TIGRFAM PPR: pentatricopeptide repeat domain 256 290 IPR002885 -
Ssu4g1496 831 TIGRFAM PPR: pentatricopeptide repeat domain 574 607 IPR002885 -
Ssu4g1496 831 TIGRFAM PPR: pentatricopeptide repeat domain 608 642 IPR002885 -
Ssu4g1496 831 TIGRFAM PPR: pentatricopeptide repeat domain 398 431 IPR002885 -
Ssu4g1496 831 TIGRFAM PPR: pentatricopeptide repeat domain 328 362 IPR002885 -
Ssu4g1496 831 TIGRFAM PPR: pentatricopeptide repeat domain 292 324 IPR002885 -
Ssu4g1496 831 TIGRFAM PPR: pentatricopeptide repeat domain 222 254 IPR002885 -
Ssu4g1496 831 TIGRFAM PPR: pentatricopeptide repeat domain 433 467 IPR002885 -
Ssu4g1496 831 TIGRFAM PPR: pentatricopeptide repeat domain 187 219 IPR002885 -
Ssu4g1496 831 TIGRFAM PPR: pentatricopeptide repeat domain 538 568 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1496 433 808 Glycosyltransferase AT1G05670 22.135 9.55e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1496 - - gmx:100814643 1528.46