Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1449 ATGGACAAGCCACTACTGCTCCTCTTCCGAATCATCTTACTATTCCTTCTCACCCGATCCCTTCTCGCCACGTCACACCCTCTAAGCCCCATCCCAATCACGCTCTCCGTCGCCGACTTCGGCGCCGCCGGCGACGGCCTCCGCTACGACACCGCAGCAATCCAATCCGCAATCAACTCCTGCCCGGAGGGGTGTCCCTGCCACGTCACCTTCCCGGCACCGGGAAAATACCTGACGGCGACCGTGTTCCTGAAATCCGGCGTGGCGTTGAACGTGGCGGCTGGGGCCACCATCCTGGGCGGCACGAGGCCAGAGGACTACCCGAAGGACTCGTCGCGGTGGTACGTGGTCGTGGCGGAGAACGCGACGGACGTCGGTATCGGCGGCGGCGGAGTGGTGGACGGGCAGGCTGCGAAGTTCGTGGCGAGGAAAGATCCGAGGAAGAACATCATGGTTAGCTGGAACCAAACAGGGGCTTGCTTAGGTGACGAATGCAGACCCAGACTCATCGGTTTCCTCGGTTGCAACAACGTTAGAGTCTCTAACATTACTCTCAACCAACCTGCTTATTGGTGCTTACACTTGGTGCGGAGTGACAACATATCCATTCACGATATTGCAATTTATGGGGACTTTAATATACCTAACAACGATGGGATTGACATTGAGGACTCAAATAACACAGTAATCACTCGATGCCACATCGATACAGGGGATGATGCAATCTGTCCAAAGTCATCCACAGGCCCTGTTTACAACCTTACAGTCACCAATTGTTGGATTCGATCCAAATCTTCTGCAATTAAACTCGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTTGTGTTTGACAATATCACTATTGTTGATTCTCATAGAGGGCTTGGATTCCAGATCCGTGATGGAGGAAATGTAAGTGACATTGTATTCTCAAACATAAATATCAGTACAAGATACTATGACCCATCATGGTGGGGGAGAGCGGAGCCTATCTATGTCACAACTTGCCCACGGGACTCAACCTCAAAGGAGGCTTCAATCTCAGATGTACTTTTCATTAACATCACAGCAAATTCTGAAAATGGCATCTTCCTGTCTGGTTCAAAGGGAGGATTGTTAAGAAATTTGAGATTCATCAACATGGACATCACCTACAGAAGGTTCACCAGTTATGCTGGTGGGTTATTGGACTATAGGCCAGGATGCCAAGAGTTGGTTAAACACAGGACCGCAGGCATGATGATGGAGCACATTGAAGGCCTTGAGGTTAAGAATGTCGAAATGAGATGGTCAAACAATCAACTAGAGCGGTGGAATAATCCTTTAGAGTTCAGGCCATCTACTGTGAATAACATCTctttccttaattttaattctgGTCTGCATACAAATAGCAAATCATATTATTAA 1410 0.4844 MDKPLLLLFRIILLFLLTRSLLATSHPLSPIPITLSVADFGAAGDGLRYDTAAIQSAINSCPEGCPCHVTFPAPGKYLTATVFLKSGVALNVAAGATILGGTRPEDYPKDSSRWYVVVAENATDVGIGGGGVVDGQAAKFVARKDPRKNIMVSWNQTGACLGDECRPRLIGFLGCNNVRVSNITLNQPAYWCLHLVRSDNISIHDIAIYGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVYNLTVTNCWIRSKSSAIKLGSASWFDFKHFVFDNITIVDSHRGLGFQIRDGGNVSDIVFSNINISTRYYDPSWWGRAEPIYVTTCPRDSTSKEASISDVLFINITANSENGIFLSGSKGGLLRNLRFINMDITYRRFTSYAGGLLDYRPGCQELVKHRTAGMMMEHIEGLEVKNVEMRWSNNQLERWNNPLEFRPSTVNNISFLNFNSGLHTNSKSYY 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1449 469 PANTHER PECTIN LYASE-RELATED 26 461 - -
Ssu4g1449 469 SMART pbh1 251 272 IPR006626 -
Ssu4g1449 469 SMART pbh1 225 246 IPR006626 -
Ssu4g1449 469 SMART pbh1 198 224 IPR006626 -
Ssu4g1449 469 SMART pbh1 305 335 IPR006626 -
Ssu4g1449 469 SMART pbh1 342 367 IPR006626 -
Ssu4g1449 469 Pfam Glycosyl hydrolases family 28 66 385 IPR000743 GO:0004650|GO:0005975
Ssu4g1449 469 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 26 461 - -
Ssu4g1449 469 Gene3D - 22 393 IPR012334 -
Ssu4g1449 469 SUPERFAMILY Pectin lyase-like 15 389 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1449 Ssu-Chr4 24100623 24104467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1449 24 463 Glycoside Hydrolase AT3G57790 67.108 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1449 - - gmx:100794954 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1449 4 24100623 24104467 Ssu4g1449 4 24100623 24104467 ECH