Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1428 ATGACGGAACCCACGGAGCCATGCACGTCTTCTTCATTGGCGAGGGACCCAAGCACCGTGATTCACCCGAGGCGAGAGCTCTTCGAGCACGGCCTCTTACCAATCCCACGACTCATCTTCTCCGACCCGGCGCAAACCCTAATTCCGTTGAAGCAGAAGCTTCTAGAATCATCCTCCAACCAGCGAGTCGACTCGGCGGCCATCTCCGAGTCACTGCAGATCTCCATTGAGCACGCCAGGCTCGTCCTCGATACCCTCGCCTCGGTTCTGCACTCCGACGCCGAACCTCTCGTCGTCGCCAAGCTCGGCGAAATCGACGCTGTCGGCGTCGACGTTCATGATCTGTTACTGTTCCTCTACATTCAATCCTACAAGAGGATCCTCCCGCGCACGCACAAGGACTCCGCCGCCGTCGCCGACGTCTGGCCTTCCACTTCCGCCTTCGATGGCTACTTGTCCGCCCTCTCCCCGCTTCAGCTTGTACGCAGCAACAGTCGGCGGTTTATGCCTTCGCAGGCTGATGAAGAGGCACATCAGTTGTTGTATCTGCAAAAACACTTGGCTAACATTCTGTCTCTTCTAGCAGAGCCTGTGGAGGGTGAAGGCGAAGAGTCTCTGGTTTTAACCATGGATAGATTCGAGCATCTTGGGTTTCTAATTCAGTTTGGTGATAAGGGATCAGAAGGAAATTCTTTGAGTCAATGTTCTCCTTTTTTTGCAAACTCAGACCCTGACATGCCTGCTGTTCCTGTTCCTGCTGCACAAGTTCATGATTGGCTTCTGCAGAATATAGCAGCTGCTTTGGAATATATTTCTGAACGGACTTCTTCAAAAGAAAATGGCCCAGCTAGTGCCTCTGATCAGGATGTTGCCATGACTGATGCAAGCACTGCCGCAGCAGTTAAGTTCTCAACAAGTACTAGAGGCGCAAGTTTCATTGAAGGGATCTCTAAATCATCATATGTGAAGCATGCATCTGATATTAAAGGTTCCTCTGTTAAGGTTCTAAATTGCCATGAGTCTGCCATCTACATCTTAGCACCATTGAGATATGCCACTGTCTATGGATGTTCTGATGCAACAATAGTTCTAGGAGCAGTTGGCAAGGCTGTGAGAGTAGAACACTGTGAACGTGTTCATTTAATTGTAGCAGCAAAACATATTTGTATTGCTAATTGCCGTGaatgtgttttctttttgggaGTGAATCAGCAACCACTTATTCTTGGTGATAACCATAAGCTGCAGGTGGCTCCCTATAATACTTTTTACTCCCAATTGGAGGAGCATATGAATGAAGTTGGGATTGTGCCCACGGTGAACCGCTGGGATGAACCTATAGCATTGGGCATGGTTGATCCCCATGATTCATTATCTCATCCAGCAGGTGTCTCTGATGTTCAAGCTGAGTCTGCTACACAGGTGGACCCTGATCAGTTCACTAATTTTGTGATTCCAAGCTGGCTTGGAGGAGAGTCCACTGGGTCTACAAAAGACAATCCGTTCACATTACCAGATGCTTATATGACATCTCAGCATAAAAATCACAAAAATTTAGGGGAGATAAGGCAACTCTTACGAGAAGCGCCTTTAGAAGAAAGTCGCAGACGAGAATTGTCATCTGCGCTCCATGTGTACTTCAAGGACTGGTTATATGCTTCGGGGAACATTCGTCAGCTTTATTGTCTACAAGGAGATTGA 1701 0.4774 MTEPTEPCTSSSLARDPSTVIHPRRELFEHGLLPIPRLIFSDPAQTLIPLKQKLLESSSNQRVDSAAISESLQISIEHARLVLDTLASVLHSDAEPLVVAKLGEIDAVGVDVHDLLLFLYIQSYKRILPRTHKDSAAVADVWPSTSAFDGYLSALSPLQLVRSNSRRFMPSQADEEAHQLLYLQKHLANILSLLAEPVEGEGEESLVLTMDRFEHLGFLIQFGDKGSEGNSLSQCSPFFANSDPDMPAVPVPAAQVHDWLLQNIAAALEYISERTSSKENGPASASDQDVAMTDASTAAAVKFSTSTRGASFIEGISKSSYVKHASDIKGSSVKVLNCHESAIYILAPLRYATVYGCSDATIVLGAVGKAVRVEHCERVHLIVAAKHICIANCRECVFFLGVNQQPLILGDNHKLQVAPYNTFYSQLEEHMNEVGIVPTVNRWDEPIALGMVDPHDSLSHPAGVSDVQAESATQVDPDQFTNFVIPSWLGGESTGSTKDNPFTLPDAYMTSQHKNHKNLGEIRQLLREAPLEESRRRELSSALHVYFKDWLYASGNIRQLYCLQGD 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1428 566 Gene3D - 310 474 IPR016098 -
Ssu4g1428 566 ProSiteProfiles C-CAP/cofactor C-like domain profile. 299 436 IPR017901 -
Ssu4g1428 566 PANTHER BNAC04G02540D PROTEIN 15 566 - -
Ssu4g1428 566 Pfam Tubulin binding cofactor C 330 445 IPR012945 -
Ssu4g1428 566 PANTHER UNCHARACTERIZED 15 566 IPR039589 -
Ssu4g1428 566 SMART carp 376 410 IPR006599 -
Ssu4g1428 566 SMART carp 338 375 IPR006599 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1428 Ssu-Chr4 23768116 23776823 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1428 K16810 - gmx:100819271 1044.26