Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1406 ATGAGCAGCGCCATCTTCAAAGCGGCAAACACCAACAATCTCCATTCGTCTCTTAGGGCCGCGCTCTTCCATTCCACTCCGCCCTTGCAACGTAAAAGGCGCAATTATTGGGACTCCAGAGGCCACAACCATTACTCGAGAAGGTTTAGAAGGATGCAAGCAAAACAAAGAGTAATGAACAGTATCAATGATTATGCAGAATTCCTGTTTCAGAGCTGGAAGGAAGATATTGGTAAGGATGATCCATCATCAAGTCGAGGCACCTCATGGTTTAGAAAACAATATTCTGATAGGGAATCTGAAAGGTACAGGAATGGCAATCAAGGATCAAGAAGTCATCGGTATAGAAGAGATCCTTTGTTTTGTGAAGATGATTATGATGTTGAAACCATTTTCCGTTCTGCATTTGGGGGGAATAGATTCTTCTATTGGTCCTTCATCAATGAGGAAAATCCTCAGTGGAGGAGGTCTGAAAGCTTTTCTAATTTTGGGAAATCTTGGAACTGGAGATATCGAAGCGAAAATAATTATGACTCTTCATCCGAGTCTGATAGTTCTGATTCAGATTTTGTCCCTGATAGATTAGCCCTCGGATTGAGTGCTTCTGGTCCTCTGAAACTTGAAGATGTAAAAAATGCGTACCGGGCCTGTGCTCTAAAATGGCACCCAGATCGTCATCAAGGCTCTTCCAAGGCTATAGCAGAAGAGAAGTTCAAGCTTTGCAGTGCGGCTTATCAATCTTTATGTGATAAGCTGGCCTTGGATTAA 768 0.4271 MSSAIFKAANTNNLHSSLRAALFHSTPPLQRKRRNYWDSRGHNHYSRRFRRMQAKQRVMNSINDYAEFLFQSWKEDIGKDDPSSSRGTSWFRKQYSDRESERYRNGNQGSRSHRYRRDPLFCEDDYDVETIFRSAFGGNRFFYWSFINEENPQWRRSESFSNFGKSWNWRYRSENNYDSSSESDSSDSDFVPDRLALGLSASGPLKLEDVKNAYRACALKWHPDRHQGSSKAIAEEKFKLCSAAYQSLCDKLALD 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1406 255 CDD DnaJ 207 250 IPR001623 -
Ssu4g1406 255 Pfam DnaJ domain 205 251 IPR001623 -
Ssu4g1406 255 PRINTS DnaJ domain signature 233 253 IPR001623 -
Ssu4g1406 255 PRINTS DnaJ domain signature 214 229 IPR001623 -
Ssu4g1406 255 SMART dnaj_3 191 253 IPR001623 -
Ssu4g1406 255 SUPERFAMILY Chaperone J-domain 149 250 IPR036869 -
Ssu4g1406 255 ProSiteProfiles dnaJ domain profile. 192 253 IPR001623 -
Ssu4g1406 255 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 11 254 - -
Ssu4g1406 255 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 11 254 - -
Ssu4g1406 255 Gene3D DnaJ domain 196 250 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1406 Ssu-Chr4 23398032 23401371 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1406 - - gmx:100807880 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1406 4 23398032 23401371 Ssu4g1406 4 23398032 23401371 ECH