Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1403 ATGGAGCAGATTGAGCATTTCAGCCACATCCACCCTCTACTGTTAAAGGAGGAACAGAAAAATGACAAGAAACAACTCCTTTGCTCAGATGATGGCCATAGGCATGCCTTTATGCTCTTGATAAACCCAAAGTCGTTAGTTTGTTATGCTTGTGGCATGGAAGTAAACGAGGACCTCGCTTGCCGATGCACCATTTGTCAGATTTGGGTTCATTCTAGTTGTGCTGAATTGCCTCTCGCTATTAGAATAAATGGCCACAATCATCGTTTGAAGCTCACTTATGCCCTTCATCACCATTATGGTTTCGGTGaagatgaagatgaggaATCATTCACTGACTATGAAACTGAGCACTCCCAAGATattgattttacttttagtttaaaGTTCATGGAGGACCAGAGCACtttgcaatattttgaaaaactctGTGATGGGTGTGCCCAACCCATCATGCCACCTTTCTTTTCTTGCCAAGAAGAAAATTGTGGTTTCTTTTTGCACCAAAGTTGTGCTGAATTACCAAGAACGAAGCAACACCCGTTTCATGTGCACCCTCTAACTCTTCTCTCCAAGGCACCTCCTTATGATGGCATTTATAGGTGCGATGGATGTAGAACATTGAGCAATGGCTTTGTGTATCGTTGTGATGAGTGTCAATTCGACCTTGATGTTTGTTGTGGTTCCCTTAAAGAGAGAGTTGAACATAAAAGTCACATGCATCCCTTGTTCCTTAAGAAGACAAGCGTTGCTAGGCAATGCAAAGGTTGTCATCTTTGGTCGAAACATGTGTTAATGTGTGACGATTGTGAGGATTTTGCTATTGATTGTGGATGTGTTGCTCTTCCGTTTAAGGCATGGCACATGTATGACAAGCATCCTCTAAGTTTAAACTATTTTGTTGAAGGGAATTTGAGGGAATGTGAATGTTGCATTTGCAATGAGAAAATGCCCCCGAAGCAATGGTTTTATTATTGTGATGAATGTGACTTTGCTGCTCATCCTTATTGTATTGTTGGCAAGTCTAAGCGTGTCAAGTTTGGAAGCAGTTTCCAATATAATGTTCACCCGCAATCTCTTGCCTTGACTGGAGAAATTGAGTAG 1104 0.3995 MEQIEHFSHIHPLLLKEEQKNDKKQLLCSDDGHRHAFMLLINPKSLVCYACGMEVNEDLACRCTICQIWVHSSCAELPLAIRINGHNHRLKLTYALHHHYGFGEDEDEESFTDYETEHSQDIDFTFSLKFMEDQSTLQYFEKLCDGCAQPIMPPFFSCQEENCGFFLHQSCAELPRTKQHPFHVHPLTLLSKAPPYDGIYRCDGCRTLSNGFVYRCDECQFDLDVCCGSLKERVEHKSHMHPLFLKKTSVARQCKGCHLWSKHVLMCDDCEDFAIDCGCVALPFKAWHMYDKHPLSLNYFVEGNLRECECCICNEKMPPKQWFYYCDECDFAAHPYCIVGKSKRVKFGSSFQYNVHPQSLALTGEIE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1403 367 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 120 355 - -
Ssu4g1403 367 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 28 99 - -
Ssu4g1403 367 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 120 355 - -
Ssu4g1403 367 SUPERFAMILY Cysteine-rich domain 33 88 IPR046349 -
Ssu4g1403 367 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 28 99 - -
Ssu4g1403 367 Pfam C1 domain 181 227 IPR004146 -
Ssu4g1403 367 SUPERFAMILY Cysteine-rich domain 260 344 IPR046349 -
Ssu4g1403 367 SUPERFAMILY Cysteine-rich domain 147 241 IPR046349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1403 Ssu-Chr4 23373711 23375214 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1403 - - gmx:121174110 563.148