Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1399 ATGAGGATCCGGAAAAGGCCGGTGCTTTTCCCTTCGTCGCTCTCGCCGTTGCCTCTCTCAGATCCCCACCTGATCAACCGGTCGCCGGTGGTGGTGCAACTCAGCGACGCTACTTCCACCGCACCGAAACCTTCTTCCGCTGCAGTGCTCCATCAGCAGCATGCTGCTTCCGCACCTCCGTCGAGCTTGGATCGTCGCCTGCCGTCTGATCAGCCGCTCCCTTCGATCGGGATGCCAAGCAACGGCTGTGATGATCCCTCCGGCATCGGTGAAAGTGGGGCACACAGACAGCACAACAAGCAAGACCCTTTGGACGAGGGTGTTAGAAGGGAAGAGAGTGGAGAGGACTCGGGAGAGAAGGGTAATCATACCAGGAAAGGACGCACCTTGGGTTCAGAAACACAAGCTGAGGTGTTGCCACCGTTGAGCCCTTCCCCTACGACTCAAGATGGGAGATGGCACGAGGGAGAGAAAGCTATTCCGCTGAAGAAAAGGAGAGGGAACTTCGAGGAGAATAATAATGCTTATGCTGCTACTCATAGTAAAAAGATGAAGGCGAAGATGAAGACGAAGATGAACAAGAAGTGTTCGACGACGCGCAACGAGGATAGCacggaagaggaagaagagaaggtAGAAGAAACAAAACTGGGTGTGAATGTGAGTAAGAAGAGAGCAAGGGGTAGTGCACTCATGGAAGGTTCTAGGTGCAGTCGTGTGAATGGGAGGGGATGGAGGTGCTGTCAACAAACGCTGGTTGGTTACTCGCTGTGTGAGCATCACTTGGGGAAGGGAAGGCTCAGAAGCATGACGAGTGTTAGAAGCCGTTCCATTGCATCTAGTGCACCGAAGAAGGTGCACCACGTGCCTCACCCTTCTTCTCTTGAGAAGCAAACTGAGAGTGTTGCTGAGCCCTTGGGGGAGGACGAGAAGAAGCCAGAGATAATCACGAAAAAGAGGATGAAGCTTGGCATGGTGAAAGCACGTTCCATAAGCAGCTTGCTGGGACAAACAAACACCCAGATTGCTGCTGTAGCTCACGAGAATAATGGCAAGTAA 1059 0.5184 MRIRKRPVLFPSSLSPLPLSDPHLINRSPVVVQLSDATSTAPKPSSAAVLHQQHAASAPPSSLDRRLPSDQPLPSIGMPSNGCDDPSGIGESGAHRQHNKQDPLDEGVRREESGEDSGEKGNHTRKGRTLGSETQAEVLPPLSPSPTTQDGRWHEGEKAIPLKKRRGNFEENNNAYAATHSKKMKAKMKTKMNKKCSTTRNEDSTEEEEEKVEETKLGVNVSKKRARGSALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMTSVRSRSIASSAPKKVHHVPHPSSLEKQTESVAEPLGEDEKKPEIITKKRMKLGMVKARSISSLLGQTNTQIAAVAHENNGK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1399 352 MobiDBLite consensus disorder prediction 128 150 - -
Ssu4g1399 352 MobiDBLite consensus disorder prediction 151 170 - -
Ssu4g1399 352 PANTHER - 28 348 IPR031137 GO:0005634|GO:0006351|GO:0032502
Ssu4g1399 352 Pfam WRC 233 273 IPR014977 -
Ssu4g1399 352 MobiDBLite consensus disorder prediction 277 314 - -
Ssu4g1399 352 PANTHER OS02G0773600 PROTEIN 28 348 - -
Ssu4g1399 352 MobiDBLite consensus disorder prediction 1 214 - -
Ssu4g1399 352 ProSiteProfiles WRC domain profile. 231 275 IPR014977 -
Ssu4g1399 352 MobiDBLite consensus disorder prediction 195 214 - -
Ssu4g1399 352 MobiDBLite consensus disorder prediction 31 59 - -
Ssu4g1399 352 MobiDBLite consensus disorder prediction 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1399 Ssu-Chr4 23297090 23298997 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1399 - - gmx:100810559 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1399 4 23297090 23298997 Ssu4g1399 4 23297090 23298997 ECH
Ssu4g1399 4 23297090 23298997 Ssu7g2732 7 55754122 55755330 PCT