Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1391 ATGATGGAGGAGGAAGAAGACCAGCAGAAGCTTCCAGATCTGGTGAAGGAGCTAGTCCACCGCGTGCTCTCCCAAAACCTCCCCCCAAATTCCCCTCCCCTAAACCCTAACTCCCCCGAATTCCGCAACTCCCTCCGCTACGCCCTCCGCATCCTCTCCAGCCGCCTCACCCCCTCCGTCGCCCCCGACGCCGCCGCCATCGCCGACTCCATCAAGCGCCGCCTCGCCACCCACGGCCGCTCCGCCGAGGCCCTCTCCTTCGCCGACCTCTTCACCAAATTCGCCTCCAAGGCCCAAAGTGTCAACAACAAATGGGCCGTCATCTACCTCCTCAAAATCATCTCCGAAGATCGCCACAAAACAAcaaccaccatcaccaatcCCTCTCTCTTGCCCAACCTCACCTTCTCCGAACCAACCGCAAACAGAGGCTGGAACAACGGCGCCCTCTTAGTCTCCAAGGATCCCGAGAACCGCCGCGACGTCTCGTTTCGCGAGTTCGCGAATTTGGTCAAGGAAGAGAACGAGGTCTCCGAGGAGGTTCTCGTCGGGGACGTGCTCTACGCGTGCCAGGGAGTCGACGGTAAGTTCGTGAAATTCGAGAGCGGGAGTAAGCGTTACGTGGTGTCCGATTCGGTTAGGGTTCCGAGAGCCACTAGGAGTGTGGTTCACCAACTTTGTGAATTGGGGGTTCTGTTTAGGAAGGTTAGTGGTTACATTTGGCAGAGTATGGATCGGTTTCCCAATGAAGATGTGGGAACTGTGGGGCAAGCTTTTTGTTCCGCTTTGCAGGATGAGCTTAGTGAGTATTATAAGTTGTTGGCGGTTCTTGAGGCTCAGTCTGCGAACCCGATTCCCTTGGTGTCTGAATCGGCGAGTTCCGGGAACTATCTTTCGCTGAGGAGGTTGGCGGTTTGGCTGGCGGAGCCCATGGTGAAGATGAGGTTGATGGCGGATTTGGTTGAGAAGTGTAGGGTTTTGAGAGGTGGCGCCATGGCGGGTGCGATTCATTTGCACGCGCAGCATGGTGATCCGCTGGTTCATGAGTTCATGCGGCGGTTGATGCAGCGCGTGTGTTCTTCGCTGTTTGAGATGGTGAGGAGGTGGGTTTTGGAAGGCGAGTTGGAGGATATATTTGCTGAGTTTTTCATTGTTGGGCAGCCTGTGAAGGCTGAGTCCCTTTGGAGAGAAGGGTATAGACTCCATGATGCCATGCTTCCTTCGTTCATTTCGCCTTCGCTTGCGCAGAGGATCTTGAGGACTGGCAAGTCGATTAATTTTCTTCGTGTTTGTTGTGAGGATCGCGGTTGGGCTGATGCTGCTACTGAGGTTGTTACTGATAATGGAGCAGCGGCAAGAAGAGGTGGTTTTGGATATGGGGAAACGGATACCCTTGAGTTTTTGGTGGATGAAGCCGCGAAAAGGATTGACAAGCATTTGTTGGATGTGATTTTTAAGAGGTACAAGTTCAAAGAACACTGTCTTGCGATTAAGCAGTATTTGTTGCTTGGCCAAGGTGATTTTGTGCAGTATTTGATGGATATTGTTGGGCCTGAGCTTTCTGAGCCAGCTAACACTATAAGCTCTTTCAAACTTTCTGGATTGCTGGAAACTGCAATTCGGGCTTCTAATGCCCAGTATGATGATCCTGACATTTTGGATAGGCTCAGGGTTAAGATGATGCCACATGAAAGCGGTGATAGGGGCTGGGATGTATTTTCACTAGAATATGATGCAAGAGTTCCACTGGATACGGTGTTCACGGAGTCTGTGATGGCAAggtatttaagaatttttaattttctgtgGAAGCTTAGAAGAGTGGAACATGCGCTTACTGGTGCCTGGAAAACCATGAAACCAAACTGCATTACTTCTAATTCCTTTACCAGATTGCAACATGCAGTAAAGATGCAATTAGTTTCGACATTAAGACGCTGTCAGGTTCTTTGGGTTGAAATTAATCACTTCATTTCAAACTTgcaatattatataatgtttgaaGTGTTGGAGGTATCATGGTCAAATTTTTTGACTGAGATGGAAGTAGCCAAGGATCTTGATGATCTACTTGCAGCTCATGAGACATATCTGCATTCTATTGTAGAGAAATCTCTCCTTGGAGAGCTTTCCCAGTCTCTTTACAAGTCactatttgtaatttttgatcTTATATTACGTTTTCGGAGCCGTGCAGATCGGTTGTATGAAGGTATTCATGAGTTGCAAGCAAGAATCACAGAATCCTCCCTATCCTCTCGAGACCAGAATAAATCACGATCACGAAAGCAACTGAATGATAAATCTGCAGAACAAGGATCCTGGATTGCTGATGGGAGGAAAGCCCTAACACAACGAGCTGGTGAATTTCTACGAAATATGGGGCAAGATCTGGATGCAATTGCTAAGGAGTATTCATCATTGCAAGAGGAATTCATTTCTCAGTTGCCTGTACAGCAGCATGTGGatctaaaatttctctttttccgTCTTGacttcaatgaattttatagGCGGTTGTGTCCTAGCatatag 2535 0.4698 MMEEEEDQQKLPDLVKELVHRVLSQNLPPNSPPLNPNSPEFRNSLRYALRILSSRLTPSVAPDAAAIADSIKRRLATHGRSAEALSFADLFTKFASKAQSVNNKWAVIYLLKIISEDRHKTTTTITNPSLLPNLTFSEPTANRGWNNGALLVSKDPENRRDVSFREFANLVKEENEVSEEVLVGDVLYACQGVDGKFVKFESGSKRYVVSDSVRVPRATRSVVHQLCELGVLFRKVSGYIWQSMDRFPNEDVGTVGQAFCSALQDELSEYYKLLAVLEAQSANPIPLVSESASSGNYLSLRRLAVWLAEPMVKMRLMADLVEKCRVLRGGAMAGAIHLHAQHGDPLVHEFMRRLMQRVCSSLFEMVRRWVLEGELEDIFAEFFIVGQPVKAESLWREGYRLHDAMLPSFISPSLAQRILRTGKSINFLRVCCEDRGWADAATEVVTDNGAAARRGGFGYGETDTLEFLVDEAAKRIDKHLLDVIFKRYKFKEHCLAIKQYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLSGLLETAIRASNAQYDDPDILDRLRVKMMPHESGDRGWDVFSLEYDARVPLDTVFTESVMARYLRIFNFLWKLRRVEHALTGAWKTMKPNCITSNSFTRLQHAVKMQLVSTLRRCQVLWVEINHFISNLQYYIMFEVLEVSWSNFLTEMEVAKDLDDLLAAHETYLHSIVEKSLLGELSQSLYKSLFVIFDLILRFRSRADRLYEGIHELQARITESSLSSRDQNKSRSRKQLNDKSAEQGSWIADGRKALTQRAGEFLRNMGQDLDAIAKEYSSLQEEFISQLPVQQHVDLKFLFFRLDFNEFYRRLCPSI 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1391 844 Coils Coil 791 811 - -
Ssu4g1391 844 Coils Coil 260 280 - -
Ssu4g1391 844 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 33 832 - -
Ssu4g1391 844 Pfam Gamma tubulin complex component N-terminal 185 486 IPR041470 -
Ssu4g1391 844 Pfam Gamma tubulin complex component C-terminal 492 837 IPR040457 GO:0043015
Ssu4g1391 844 Gene3D - 491 836 IPR042241 -
Ssu4g1391 844 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 33 832 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1391 Ssu-Chr4 23143288 23145915 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1391 K16570 - gmx:100784710 1530.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1391 4 23143288 23145915 Ssu4g1391 4 23143288 23145915 ECH