Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1384 ATGGTCTTTCACATGCTTACATTCAGTATCCACCACTTCGGTGTAATGTTCCTGGATCAAGTGcattattttatgatgatggAAATAAGTTGCTACTCTCTCCAACAGCTGACCAGGGTCTTTTCATGGAAAGTTGGTCCCTTTGATCCTCTCATTGGTCCAACCACTGATTCAATAAGTGAAGGCCCTATTATAGCTATTCGGTATTCTTTAGACACAAAGGTAATAGCAATCCAACGATCAAACCATGAGATACAATTTTGGGATAGAGAGACTGGGGAGACTTTTAGCCATACGTGCATGCCAGAATCAGAAAGTATACTTGGATTTTTTTGGACAGATAGTCAACAGTGTGATATTGTTCTTGTTAAGAACAGTGGTCTAGACTTGTATGCATATAATTCAGAGTCAAAATCACTGCAACTGGTGCAAACAAAGAAAGTGAATGTGAGTTGGTTTGTTTACACCCATGAAAGTCGCTTGGTTCTTCTTGCTTCTGGCATGCAGTGCAAGACATTCCATGGATTTCAGATTTCATCTGCAGATATTGTTCGCTTGCCAAGGTTTGAGATGGTTATGGCCAAATCTGAGGCAAATAGTAAGCCTGTTTTAGCAGCTGAAGACATCTTTATTGTCACTGTTTATGGTAGGATATACTGCTTGCAAGTTGATAGAGTTGCTATGCTGCTCCATTCTTATAGGCTATATCGTGATGCAGTGATACAGCAGGGTTCTTTACCAATTTATTCCAACAGGATTGCCGTGAGTGTGGTTGACAATGTACTTCTTATTCATCAAGTTGATGCAAAGGTTGTTATACTTTATGATCTCTTTGTAGATTCTCGAGCACCAATATCTGCACCGCTTCCTTTATTACTAAGGGGTTTTCCCAGATCCAGTTCTTTATCTCAATATAGTGGTAGAGAAAGTGAGAGTTCAGACGGTAATGTTTTGAGTAATCATGAAGCAGTTACATATGCCAATACATGGACTTTCCTAGTGCCTGACCTCGTATGCGATGTGGCCAATAAGTTATTGTGGAAGTTCAATTTAGACTTAGAGGCAATTTCCGCTAGTAGCTCAGAGGTCCCATCAGTATTAGAGTTCCTGCAGCGACGGAAGTTGGAAGCTAACAAGGCTAAACAATTGTGCTTGGGCATAACACGTACACTTATTCTAGAGCATAGACCTGTGCCTGTGGTTGCCAAGGCTGTAAATGTACTAGTCACCTCATACTCTCATTCAATTAAAACTGGTGGCTATCTTAAGGGACTGAAACCAGAGAAGACATCAACTTCTGTTGTACAAAATACTGGTGCTGATGTATCTGCAATCGAAACAGATGTAATTGGAAAATCGATCTTACATGAATCTACAAAAAGAGTAGACAGTGGATCTTTTAATAAAGCTTCAACTGTTTCAAGTTTGGATTCTGAGGATGAGTCCCAGTCTGCAAATCCAAAACACAATTCAAAGGATGCCCAAGGTGAGGGTAAAGTGAACAATGCGATCTCTCTGAGCACTGGAGCTCATGGTGCTTATGTTATGCAATCATCTCTGCAGTCTGGGCAAGAGGAATCCCAACTTACTTCCGCAGCAATTTCACCAGATGAGATGTACAGCTTCATCTTTTCTCCTGTCGATGAAGAGATGGTTGGAGACCCTTGTTACTTGGTTGCTATCATTATTGAGTTCCTTCACAGTGCAAATTCAGAAAAGATTCGTGTACTCCCAAAtgtatatgtattaataattcaACTTCTGGCCCGCAACGAACGTTATGCAGAGCTCGGGTTGTTTGTCTTAAACAAGATTCTGGAGCCCTCTAAGGAAGTTGCACTACAACTCTTAGAGTCTGGTCGTCAGAATGCCCAAACTAGGAAGCTTGGTCTGGATATGCTGAGACAGCTGGGTTTACATCATGATTATGTTTTACTGCTTGTGCAGGATGGATACTACCTTGAAGCATTACGATACGCACGGAAATACAGGGTGGATACCATCCGGCCATCATTGTTCTTAGAAGCAGCATTTGTTTCCAATGACTCCGAACATCTTGCTGCGGTTATAAGGTTCTTTGCAGATTTCCTCCCTGGCTTCAAAAACACCTCAGAGCATAATAGATACTGCCGCATACTGAATGAAATGAACTCATCCATGACTGTTTga 2169 0.4071 MVFHMLTFSIHHFGVMFLDQVHYFMMMEISCYSLQQLTRVFSWKVGPFDPLIGPTTDSISEGPIIAIRYSLDTKVIAIQRSNHEIQFWDRETGETFSHTCMPESESILGFFWTDSQQCDIVLVKNSGLDLYAYNSESKSLQLVQTKKVNVSWFVYTHESRLVLLASGMQCKTFHGFQISSADIVRLPRFEMVMAKSEANSKPVLAAEDIFIVTVYGRIYCLQVDRVAMLLHSYRLYRDAVIQQGSLPIYSNRIAVSVVDNVLLIHQVDAKVVILYDLFVDSRAPISAPLPLLLRGFPRSSSLSQYSGRESESSDGNVLSNHEAVTYANTWTFLVPDLVCDVANKLLWKFNLDLEAISASSSEVPSVLEFLQRRKLEANKAKQLCLGITRTLILEHRPVPVVAKAVNVLVTSYSHSIKTGGYLKGLKPEKTSTSVVQNTGADVSAIETDVIGKSILHESTKRVDSGSFNKASTVSSLDSEDESQSANPKHNSKDAQGEGKVNNAISLSTGAHGAYVMQSSLQSGQEESQLTSAAISPDEMYSFIFSPVDEEMVGDPCYLVAIIIEFLHSANSEKIRVLPNVYVLIIQLLARNERYAELGLFVLNKILEPSKEVALQLLESGRQNAQTRKLGLDMLRQLGLHHDYVLLLVQDGYYLEALRYARKYRVDTIRPSLFLEAAFVSNDSEHLAAVIRFFADFLPGFKNTSEHNRYCRILNEMNSSMTV 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1384 722 SUPERFAMILY WD40 repeat-like 58 234 IPR036322 GO:0005515
Ssu4g1384 722 Pfam Colon cancer-associated protein Mic1-like 556 694 IPR009755 -
Ssu4g1384 722 MobiDBLite consensus disorder prediction 465 499 - -
Ssu4g1384 722 MobiDBLite consensus disorder prediction 465 481 - -
Ssu4g1384 722 PANTHER COLON CANCER-ASSOCIATED PROTEIN MIC1 38 718 IPR040371 GO:0010506|GO:0035658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1384 Ssu-Chr4 23003927 23016469 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1384 K24763 - gmx:100500389 1236.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1384 4 23003927 23016469 Ssu4g1384 4 23003927 23016469 ECH