Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1379 ATGGCCAAATCCATTTTCTTCACCTGCCTTAACCTTTGTTTACTCTTCTCTCTGGTCACGGCCACTTACTACCAAAGTCTGGCCCCAACACTTCTGGGTTTTGGCGAGGAGAAGTTCACCCACCTTCACTTCTACTTCCACGATGTCGTGACGGGCCCAAAGCCCAGCATGGTGATCGTGGCCGAGCCCAACGGGAAAGCGAAAGATGCCCTTCCGTTCGGAACCGTGGTGGCCATGGACGACCCACTGACCGCGGGGCCCGAACCCGACTCCAAACTGGTGGGAAAGGCGCAGGGAATTTACACGTCCATATCGCAGGAGGAGATGGCGCTGATGATGGTGATGACGATGGCGTTCACGGACGGAGAGTTCAACGGCAGCACCATCAGCGTGTTGGCGAGGAACATGATCATGAGTGAACCCGTGAGGGAGATGGCTATTGTTGGCGGCACAGGGGCTTTTCGGTTTGCACGTGGGTTTGCTCAGGCCAAGTTTTACTCGGTTGATTTCACCAAAGGGGATGCTGTTGTGGAATACGACGTATTCGTGAACCATTATTGA 561 0.5437 MAKSIFFTCLNLCLLFSLVTATYYQSLAPTLLGFGEEKFTHLHFYFHDVVTGPKPSMVIVAEPNGKAKDALPFGTVVAMDDPLTAGPEPDSKLVGKAQGIYTSISQEEMALMMVMTMAFTDGEFNGSTISVLARNMIMSEPVREMAIVGGTGAFRFARGFAQAKFYSVDFTKGDAVVEYDVFVNHY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1379 186 PANTHER NUCLEOPORIN-RELATED 6 185 IPR004265 -
Ssu4g1379 186 PANTHER DIRIGENT PROTEIN 6 185 - -
Ssu4g1379 186 Pfam Dirigent-like protein 40 183 IPR004265 -
Ssu4g1379 186 Gene3D - 34 174 IPR044859 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1379 Ssu-Chr4 22885369 22885929 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1379 - K25075 gmx:100817686 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1379 4 22885369 22885929 Ssu4g1379 4 22885369 22885929 ECH