Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1372 ATGAATCAATTGGATTCAACGCCTTCCCTTGCCCTCCAGGTATTTAATTGGAGAAGAAAGAGATCTAATGTTAACGACCCTATGGATCCATATGAGTACGCAAAGGGTATAAAAGCTGCAGGTAGATCTGGGAATATTGATGTTGCTGTTTCGCTCTTTAAGGAGGCTGCCACCAAAGGTATGAAGACGACCAGCACTTACAATGCGCTAATGAGTGCTTTTATGGTCAATGGTCTTGCCGATTGCTGCCAGTCCTTGTTTTGTGATTTGAAGAGGGATCCAACTTGCGATCCTTCGATTGCCACGTACAATATTCTTATATCTGTTTTTGGTGGCTTGATGCTGGTTGATCACATGGAAGCAACATTCCGCGAGATACAAAAGTTAGACCTTGCCATGAACACCAGCacttataatcatttaattgctGGATATATGACGGCTTGGATGTGGGATGATATGGAAAAGGTTTTCCAAATGTTGAAGTCAGGCCCCGTTGAGCCTAACATGAAAACCTACCTCCTAATGCTTCGCGGGTATGCAAATTCAGGTAATCTGGTAAAGATGGAAGAGATGTATTCCTTTGTAAGGGatcatgtaaataaaaatgaaattccaTTAATCAGATGTATGATATGTGCCTATATTAGAAGTTCTGAAGCAGACAGACTTAAGAAGATAGAGGTATTGTTGAAGTTTATTCCAGGAAAAGAGTACAGGCCATGGTTCAATGTTTTGTTGATTAAACTCTATGCCAAGGAAGACTGGTTAGAGAAAATGGAGAATGCAATAAATGAAGCATTTGAGCATGGAACATCCGTAACAACCAAGGGTATTATGAGATGCATAATTGCAACTTATTTTCGGTGCAATGCAGTAGAAAAGCTAGAAAATTTTGTGAGACGTGCTGAAATCTCTGGGTGGACAATCTGCCGCTCCTTATATCATTGTAAGCTGGTCATGTATGGGTCACAGAGGCCCTTAAACGAAATGCATAATGTCCTTGAGGAGATGGAAAATGTCAAGCTTCATTGCACAAAGAAAACATTATGGATAATGTACAAAGCTTACATGAGCCGTGGCCAGAGTTccatggttttaaaaacattggggCAAATGTTCAAGCATGGTTATGAAGTTCCCTTGGACGCATTtccatcataa 1164 0.3849 MNQLDSTPSLALQVFNWRRKRSNVNDPMDPYEYAKGIKAAGRSGNIDVAVSLFKEAATKGMKTTSTYNALMSAFMVNGLADCCQSLFCDLKRDPTCDPSIATYNILISVFGGLMLVDHMEATFREIQKLDLAMNTSTYNHLIAGYMTAWMWDDMEKVFQMLKSGPVEPNMKTYLLMLRGYANSGNLVKMEEMYSFVRDHVNKNEIPLIRCMICAYIRSSEADRLKKIEVLLKFIPGKEYRPWFNVLLIKLYAKEDWLEKMENAINEAFEHGTSVTTKGIMRCIIATYFRCNAVEKLENFVRRAEISGWTICRSLYHCKLVMYGSQRPLNEMHNVLEEMENVKLHCTKKTLWIMYKAYMSRGQSSMVLKTLGQMFKHGYEVPLDAFPS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1372 387 Pfam Pentatricopeptide repeat domain 52 112 IPR002885 -
Ssu4g1372 387 Gene3D Tetratricopeptide repeat domain 130 199 IPR011990 GO:0005515
Ssu4g1372 387 Gene3D Tetratricopeptide repeat domain 2 129 IPR011990 GO:0005515
Ssu4g1372 387 PANTHER OS05G0407900 PROTEIN 1 386 - -
Ssu4g1372 387 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Ssu4g1372 387 PANTHER EXPRESSED PROTEIN 1 386 IPR044179 GO:0003729
Ssu4g1372 387 Gene3D Tetratricopeptide repeat domain 242 384 IPR011990 GO:0005515
Ssu4g1372 387 Pfam PPR repeat family 134 182 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1372 29 385 Glycosyltransferase AT1G05670 21.925 1.21e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1372 - - gmx:100792116 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1372 4 22645824 22647414 Ssu4g1372 4 22645824 22647414 ECH