Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1364 ATGATGTCAGACGAGGAACTGATGCAGAAGCTGGAAGACTTAACCAACAACGCCCAACATCACCAGTTGGAGACTCTCCGTTCAATCCTTCTTCACAATGGCACCGTACGCTATCTCCAATCCTTCAAGGGCCCTCTTCATCTTGATCCCTCCACTTTCACACGTGTTGTGCCCCTGTCGTCCTATGAAGACTACGTTGACTACATTAACCAGATGGCAGAAGGGAAAGATGACCATTTTCTCTCCGTTGATCCTCTCATCTGCTTTTTCTACAGCTCGGGAACAAGTTCAAGCTCCATGAAACCGAAATTGATACCTTACTTTGATTCAAGCCTTTCCAAGGCTGCCTCCTTTATTGGTCATCGAGGCAGTGTCGCTGTTCGTCAAAGGCTATTTCCTCCAAGGCCAGAAGTGAACAAGATCCTATGGTTTCTCTATGCAGACAATGTCACTACTACTCAATGTGGCTTGAAAGTCATGGCTGCCTCTACATACCCTTTGCAAAGTGGTAATGCTACCCCTCAACACCTTGCTACATTTTCCAGTCCCCTAGAAGTGATTATTGGATCCCATGTTGAGCATCAAATGTACTGCCACCTTCTATGTGGCCTTAGGAATCTTGACCTTATAGATGGAATCACAACCCCTTATGCCATAGGCTTGATTAAAGCATTTGGTCTTCTGGAGTCCAAGTGGGAGCAACTATGTGATGATCTTGATCATGGATTTCCATCTAATGCAATTTCAGAGGTGGCAATGAGGGAAGCTGTGACTAAGACACTTGGTGGACCTCAGCCAGAATTGGCAAATAGAATAAGGCTGATCTGTGAAGGTAACAGCTGGGGTGGAATAGTGAATAGATTGTGGCCAAGCATTCGTTATATCAGGTGTGTTACCACTGGAAGCATGAAGCACTACTACCAAAAGCTCAAGTACTACGCAGGAGAGGTACCTATTCTTGGAGGAGATTACTTTGCTTCAGAGTGCTGTCTGGGTATAAATTTAGACATAATGCAACCCCCTGAGACAACACGATTTGTTATGCTTCCAACTGCTGCCTACTTTGAGTTTCTTCCATTTAACATGAATGAGAACAATGTTAGCAAGGAAACAGTGGACCTTAACAGTGTGGAGGTTGGGAAGATGTATGAAGTGGTTGTTACTACTTACAGAGGATTCTACCGCTACCGTTTGGGTGATATAGTGAGAGTTGTTGGTTTCCATAACTCTTCTCCACAAGTAGAGTATGTGATGAGAGCACCTAAAACTCCTGCTGAGATTGTGACTGAGAAAGACTTGATTTCAGCagttgaaaattttcaacttgCGCTCAGAGGTGCTATGAGAATTGAGATTGTAGAGTTTGCAAGTTTCTTGGACCAGGAGTCAAGGCCTAAGCAGTTGAAGGTATTTGTGGAAGTCCAAGAGGAATCTAATTTTCTGGAGGATAAACTGGAGGAATCAGCTAAAATTATTAGAAGTTGTATCTCCCCTCTCGAGAGTGGCTTGGGAGCTATGTACAAGGTGCAAAAGGATAAAGGTCAACTAGGGAACTTACTGATATTCATACTAAGGCCTGGAGCTTTTGATCAGTTATTAGAATTGGCCATTAAGAATGGAACATCAGCTAGTCAATATAAACCACCCAAGATCATAAGGAATCATGAAGTTGTCAAACTCTTGGAAAAATTGGCTTATGTGATAGTATCATTAGACGGCTAA 1722 0.4286 MMSDEELMQKLEDLTNNAQHHQLETLRSILLHNGTVRYLQSFKGPLHLDPSTFTRVVPLSSYEDYVDYINQMAEGKDDHFLSVDPLICFFYSSGTSSSSMKPKLIPYFDSSLSKAASFIGHRGSVAVRQRLFPPRPEVNKILWFLYADNVTTTQCGLKVMAASTYPLQSGNATPQHLATFSSPLEVIIGSHVEHQMYCHLLCGLRNLDLIDGITTPYAIGLIKAFGLLESKWEQLCDDLDHGFPSNAISEVAMREAVTKTLGGPQPELANRIRLICEGNSWGGIVNRLWPSIRYIRCVTTGSMKHYYQKLKYYAGEVPILGGDYFASECCLGINLDIMQPPETTRFVMLPTAAYFEFLPFNMNENNVSKETVDLNSVEVGKMYEVVVTTYRGFYRYRLGDIVRVVGFHNSSPQVEYVMRAPKTPAEIVTEKDLISAVENFQLALRGAMRIEIVEFASFLDQESRPKQLKVFVEVQEESNFLEDKLEESAKIIRSCISPLESGLGAMYKVQKDKGQLGNLLIFILRPGAFDQLLELAIKNGTSASQYKPPKIIRNHEVVKLLEKLAYVIVSLDG 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1364 573 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 2 569 IPR004993 -
Ssu4g1364 573 Pfam GH3 auxin-responsive promoter 10 555 IPR004993 -
Ssu4g1364 573 Coils Coil 4 24 - -
Ssu4g1364 573 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.6-RELATED 2 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1364 Ssu-Chr4 22501871 22504274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1364 8 563 EF-hand Containing Proteins AT1G23160 32.689 2.77e-98 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1364 K14487 - gmx:100786829 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1364 4 22501871 22504274 Ssu4g1364 4 22501871 22504274 ECH