Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1361 aTGAGAGAGATACAATTACCGTTAAGCCAAACTCAGAAGGTTCGTCTTCAGAAGGCTCTAGAACAGTTAGAGTCTCTGTCATCGAAGGTGAATTACGATGCTTCGGTGATCGTCGCTGATTCCATCCACGTCAACCACGAAGACGGCGTGCTGAAGGGACACGGAACCGCCGACCTCAGCGGCGAAGTCGTCGCCACCGTCTGTGGTGTTGTTGAGCGCGTCAACAAACTTGTCTACGTCCGTGCGTTACGCTCCAGGTATAAACCCGAGGTTGGTGACATCGTTATAGGGCGTGTTGTTGAGGTTGCTCAGAAGCGTTGGAGATTGGAGATAAATTACAGTCAGGATGCAGTTTTGATGCTTTCTTCTATGAATATGCCTGATGGTGTCCAGAGGCGGAGGACAGCTATGGATGAGCTAAACATGCGCTGCATTTTTGAGGAGAAGGATGTTGTTTGTGCCGAAGTTCGTGGTTTCCAGCATGATGGCTTACACCTTCAAGCTAGGAGTCGGAAGTACGGAAAGCTTAACAGAGGTCAACTGCTTACGGTCTCACCTTATTTAGTGAAGAGACAGAAACAACATTTCCATCATCTGGAGGAGTTTGGTATTGATTTGATACTTGGCTGTAATGGATTCATATGGGTTGGGGAACATATTGAAGCCAAAGATGATATGGTAGAAGATCAAGTGAATCAATCTGATCTACAAGTTTTATTGCCTAGTAAAAATTGTATGAGTCTTGAAGAGCaagagaaaaattatacaaCATTGGAGACAAGAAAATACATATGCAGAGCTGCTAATGCTGTTAGAGTATTATCAACCTTAGGCTTCAACATAACATTGGAAATCATCAAGGGAATTATTGATCTAAGCCTAtctatgaatattgatatacaCGAGATGCTTGGTTCTGAGTTCTGTGTTCTGGTTACCGAAAAAGAGGCTGAAAGGAGAAgctcaaataaaaagaagctgTAG 984 0.4197 MREIQLPLSQTQKVRLQKALEQLESLSSKVNYDASVIVADSIHVNHEDGVLKGHGTADLSGEVVATVCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVVEVAQKRWRLEINYSQDAVLMLSSMNMPDGVQRRRTAMDELNMRCIFEEKDVVCAEVRGFQHDGLHLQARSRKYGKLNRGQLLTVSPYLVKRQKQHFHHLEEFGIDLILGCNGFIWVGEHIEAKDDMVEDQVNQSDLQVLLPSKNCMSLEEQEKNYTTLETRKYICRAANAVRVLSTLGFNITLEIIKGIIDLSLSMNIDIHEMLGSEFCVLVTEKEAERRSSNKKKL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1361 327 SUPERFAMILY Nucleic acid-binding proteins 85 176 IPR012340 -
Ssu4g1361 327 SUPERFAMILY Ribosomal L27 protein-like 44 82 - -
Ssu4g1361 327 PANTHER EXOSOME COMPLEX COMPONENT RRP4 10 322 - -
Ssu4g1361 327 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 179 322 IPR036612 GO:0003723
Ssu4g1361 327 PANTHER PNAS-3 RELATED 10 322 IPR026699 GO:0000178|GO:0003723
Ssu4g1361 327 Pfam KH domain 179 219 IPR004088 GO:0003723
Ssu4g1361 327 Gene3D - 88 177 IPR012340 -
Ssu4g1361 327 Gene3D - 36 87 - -
Ssu4g1361 327 CDD S1_Rrp4 86 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1361 Ssu-Chr4 22466617 22468456 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1361 K03679 - gmx:100776358 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1361 4 22466617 22468456 Ssu4g1361 4 22466617 22468456 ECH