Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1352 ATGGGTAAGATTCTCCGAGAAACCGCGAAGCCGTCGGGGAATTCTTCTTCGGCGTACCCCTCTGCGGCGCCCATGACCACGTCGTCGACGTCGGTGACGGAGACGGTGAGGGGCTCGCACCAGTTCAAGATCACGGGGTACTCGCTCTCGAAGGGGATCGGGATTGGGAAGTACATAGCCTCCGACGTGTTTTCCGTTGGCGGGTACGATTGGGCCATTTATTTCTACCCAGATGGGAAGAGCATGGAGGACAATGCCACCTACGTGTCGCTCTTCATCGCGCTGGCCAGCGACGGCACCGACGTTAGGGCACTTTTCGAGTTGACCCTTTTGGATCAGAGTGGCAAGGAGAGGCACAAGGTGCATAGCCATTTCGAGAGGACCCTCGAGAGCGGGCCTTACACCTTAAAATACCGCGGTAGTATGTGGGGTTACAAGCGGTTTTTTAAGAGAACAGCTCTAGAGACATCAGACTACCTTAAAGATGATTGTCTCTCTGTGAATTGTAGTGTTGGTGTTGTGAGGTCACGCACAGAAGGTCCTAAAATCTATACCATAGCAATACCGCCTTCTAGCATTGGTCAGCAATTTGGGCGACTACTGGAAAATGGTAAAGGAAGTGATGTGAATTTTGAAGTGAATGGAGAAATTTTTGCTGCTCATAAATTGGTACTAGCAGCTCGTTCTCCTGTTTTCAGAGCCCAGCTTTTTGGTCCTATGAAAGATCAGAATACTCAGTGTATTAAAGTTGAAGATATGGAGGCTCCAGTTTTTAAGGCACTGCTTCATTTTATATACTGGGACTCACTACCAGACATGCAAGAGCTTACTGGATTGAACTCAAAATGGGCATCAACCTTGATGGCTCAGCATCTTCTAGCAGCAGCTGATCGATATGGCTTAGAGAGGCTTAGGCTGATGTGTGAAGCGAGTCTCTGTGAAGATGTTGCTATTAATACTGTGGCTACGACTCTAGCCTTGGCTGAGCAGCACCATTGTTTCCAGCTGAAAGCTGTCTGTCTCAAGTTTATTGCTACCTCTGAAAATCTCAGAGCTGTGATGCAAACTGACGGATTTGAGTACTTGAAGGAAAGTTGCCCATCTGTCCTTACTGAGCTATTGGAGTACGTGGCCAGATTTACTGAGCATTCGGACTTAATGTGCAAGCATAGGAATGAAGCAATACTTGATGGCAGTGACATAAATGGGAGGCGGGTGAAGCAAAGGACTCTAGTGTGA 1239 0.481 MGKILRETAKPSGNSSSAYPSAAPMTTSSTSVTETVRGSHQFKITGYSLSKGIGIGKYIASDVFSVGGYDWAIYFYPDGKSMEDNATYVSLFIALASDGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLSVNCSVGVVRSRTEGPKIYTIAIPPSSIGQQFGRLLENGKGSDVNFEVNGEIFAAHKLVLAARSPVFRAQLFGPMKDQNTQCIKVEDMEAPVFKALLHFIYWDSLPDMQELTGLNSKWASTLMAQHLLAAADRYGLERLRLMCEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATSENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDLMCKHRNEAILDGSDINGRRVKQRTLV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1352 412 ProSiteProfiles MATH/TRAF domain profile. 37 171 IPR002083 GO:0005515
Ssu4g1352 412 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 175 IPR008974 GO:0005515
Ssu4g1352 412 SMART math_3 42 154 IPR002083 GO:0005515
Ssu4g1352 412 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 20 390 IPR045005 GO:0016567
Ssu4g1352 412 CDD BTB_POZ_BPM_plant 193 313 - -
Ssu4g1352 412 SUPERFAMILY POZ domain 184 314 IPR011333 -
Ssu4g1352 412 Gene3D - 316 392 - -
Ssu4g1352 412 SMART BTB_4 207 316 IPR000210 GO:0005515
Ssu4g1352 412 MobiDBLite consensus disorder prediction 9 31 - -
Ssu4g1352 412 Gene3D Potassium Channel Kv1.1; Chain A 183 310 IPR011333 -
Ssu4g1352 412 CDD MATH 38 171 IPR002083 GO:0005515
Ssu4g1352 412 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1-LIKE 20 390 - -
Ssu4g1352 412 SUPERFAMILY TRAF domain-like 34 173 - -
Ssu4g1352 412 MobiDBLite consensus disorder prediction 1 31 - -
Ssu4g1352 412 CDD BACK_AtBPM-like 313 376 IPR034090 -
Ssu4g1352 412 ProSiteProfiles BTB domain profile. 207 266 IPR000210 GO:0005515
Ssu4g1352 412 Pfam BTB/POZ domain 198 314 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1352 Ssu-Chr4 22349977 22355580 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1352 K10523 - gmx:102668882 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1352 4 22349977 22355580 Ssu4g1352 4 22349977 22355580 ECH
Ssu4g1352 4 22349977 22355580 Ssu7g2077 7 41103564 41110668 PCT