Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1351 ATGTTGTTCTTCTCGTACTTCAAGGATTTGGTGGGGAGGGAAGTAACCGTGGAACTGAAGAACGATTTGGCCATCAGGGGGACGTTGCATTCTGTTGATCAGTACCTCAACATCAAGCTCGAAAACACTCGCGTTGTCGATCAAGACAAGAGTACATTGAAATTTCAAAGTTGCTTTGGATACTTCAAATTTATGCTAAATGTGAAGGCTAAAAGGACTTATTATTCAGATATTTTACTTCATCTACATTTGAACACAGTAGGACAAGAGATTGAAATGGTTATAACTTTTGTCGATTGTTGGAAATTGGGAACTTTCCGTAAGAAACTGCTTCATCAGAGGGTCGGTAGTGAGATATGTGCAATTGCCTCCAGAAGGGGTGGACATTGA 390 0.4026 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKSTLKFQSCFGYFKFMLNVKAKRTYYSDILLHLHLNTVGQEIEMVITFVDCWKLGTFRKKLLHQRVGSEICAIASRRGGH 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1351 129 Gene3D - 1 61 - -
Ssu4g1351 129 PANTHER SNRNP CORE PROTEIN FAMILY MEMBER 1 52 IPR016654 GO:0006397
Ssu4g1351 129 Pfam LSM domain 7 54 IPR001163 -
Ssu4g1351 129 SUPERFAMILY Sm-like ribonucleoproteins 1 59 IPR010920 -
Ssu4g1351 129 SMART Sm3 5 96 IPR001163 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1351 K12621 - pvy:116138371 103.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1351 4 22339498 22341878 Ssu4g1351 4 22339498 22341878 ECH