Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1348 atgttagCAGCCACAGGTGTCGATGTCCCAAGCCTTGCTGTAGATGGGAACTCTCCAGCTACACTTCATTTGCCTTTGGCAGCTTTTGTAAGCCTCACAATAACATATAAACTTGACAAGGCCGCTGAACGATTCCTTGCACTGATTGCCCCTGCTATGAGTGCCCTTGCTTCTGGTTGTCCCTGGCCCTCCTTGCCCATTGTGACGTCTTTGTGGATCCAAAAGGCGAAGCCTTGGAGTAACTACTTTGTGCTTTCTGCTTCCAGAACTGTTTTCCACCACAACAGGGATGCTGTAGTTCAACTACTAAAAAGTTGCTTCACATCCACCCTTGGGCTTGGCTCTGCCTGCATTTATAATAATGGCGGTGTCAGTGCCCTCCTTGGTCATGGCTTTGTTTCCCAAATATCCGATGGGATCTCTCCAGTTGCTCCAGGGATTCTTCACCTAAGAGTCTACCGGTCTATTGGAGATATCACGTTATTGATTGAAGAAATTGTGCCTATTCTAATGCTTTCAGTTACAGACATAGCAAGCAGTGATTTGCCCAAGGGGGtgtaa 561 0.4652 MLAATGVDVPSLAVDGNSPATLHLPLAAFVSLTITYKLDKAAERFLALIAPAMSALASGCPWPSLPIVTSLWIQKAKPWSNYFVLSASRTVFHHNRDAVVQLLKSCFTSTLGLGSACIYNNGGVSALLGHGFVSQISDGISPVAPGILHLRVYRSIGDITLLIEEIVPILMLSVTDIASSDLPKGV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1348 186 PANTHER OS07G0681500 PROTEIN 1 186 IPR039638 GO:0016592|GO:2000762
Ssu4g1348 186 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1348 Ssu-Chr4 22301015 22302150 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1348 - - pvu:PHAVU_001G148600g 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1348 4 22301015 22302150 Ssu4g1348 4 22301015 22302150 ECH