Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1346 ATGGCAAGTCTCGTGCCATGCTTCTCATTCTCGGTAATTCCTCGGAATCAGCACAAATCCAAATGGTCTTGTTTTCACAAACCTTTTATCCAAAGGAAGCTTCACCAACCTGGATTGCAAAACCTCGTTACCCCCTTTTCCCAGAAACCCACTTCAAAATTGTGTGCCACGTCACGATTGTCCGTTGAGGAAACTCTGCAGCAACTCGGCACCTTGACCCGACCCGAATACCTAAAAGGGGCATCGGCGTATTTGTTTAGGACAGAAACTGGTGGCGGTTTGGTGAAGGTTTATGTCACAAAGGAAAAAGATAGGTATTCTGTTTACATTGAGATTTCTTCGTTGGATATGAGTGGTGGTGAGGGTGAAacgttgttgttgtgttggggTGTGTATAGAGCTGATTCATCGTGTTTTGTGGATCTGGATTCGACAGGTTTGAGTGTGAATGCGGCGACAGGGATGAATGTTAGTCCACTGGTGCAAACTTCTCGTGGCAAGTTTGCAGTTGAATTGGAATTTGACGCCAAACATGTGCCCTTGTACTTGTCATTTTTCTTGATGTCATCTTTGGATGCAGGGTTGGAAATCAGAAGCCATAGGAGAACAAGGTTTTGTGTGCCAGTTGGGTCTCTTCCGGGGTACCCGGGTCCTCTGGGGCTCTCTTTTAATGCTGATGGGTCTGTGAATTTTGCCATTTTCTCTAGACATGCAGAGAGTGTGGTTTTGTGCTTGTATGGTGACAATGGTGTGGAGAAGCCTGCTTTGGAGCTTGATTTGGATCCTTATGTGAATAGGTCAGGTGACATCTGGCATGTCTCATTAGAGAGTGCCAAGAGTTTTGTGAGCTATGGTTATCGCTGCAGAGGGGCTCTTAAGCAGAACAAGGATGAAAGTTGTGCTGAGCATGTTGTTTTGGATCCGTATGCTAAGATTGTTGGGAATTCTTATCCTGATGGTCTTGGATCAGTGAAGAATCTTGGGTGGTTGGGGAAGGAACCTGTTTTTGACTGGGGTGGTGATTGTCATCCAGATTTATCCATGGAGAAACTAGTGGTCTATAGGTTGAATGTGAAGCGATTTACACAGCATGAGTCCAGCCAACTTCCAAGTGGTTTAGCTGGGACCTTTACTGGTTTGGCTAAGAAGGTGCAGCATTTTAAAGATCTAGGTGTGAATGCTGTTCTGCTGGAGCCGGTTTTCATGTTTGATGAGGAAAAAGGACCATATTTTCCTTTCCATTTTTTCTCTCTGATGCACGTTTATGGACCATCTGGTGGTCCTGTATCTACTATTGATTCTATGAAAGAGATGGTTAAAACTATGCATGCCAATGGGATAGAAGTTCTTGTGGAAGTTGTTTTCTCCAATACTGCGGAGATTGGTGCTCTACAGGGAATTGATGACTTGTCCTACTATTATGCAAATGGAGTTGGTGATTTGAAGGTACAGAGTGCTTTGAACTGTAACTATCCTATAGTGCAAAATTTGATTCTGGATAGTCTGCGGCATTGGGTGACTGAGTTTCACATTGATGGCTTCTCCTTCATAAATGCTTCACACATGCTGAGGGGATTTCATGGGGAGTACTTGTCTCGACCTCCATTAGTTGAAGCAATTGCTTTTGACCCAGTACTCTCCAAGACTAAAATCATTGCAGATTGTTGGGATCCCCATGACAAGGTAGTAAAGGAAACTCGCTTTCCTCATTGGATGAGATGGGCTGAAATAAATGCAAATTTTTGTATTGATGTGAGGAACTTTTTAAGGGGTGAAAATTTTCTTAGCGACCTTGCAACAAGACTTTGTGGGAGTGGGGACATGTTTTCTGGTGGACGAGGCCCCGCATTCTCATTTAATTACATTGCCAGGAATTTTGGACTTTCCCTTGTAGACTTAGTTAGCTTCAGCAGTGCGACAGAATTAAGTTGGAATTGTGGAGAAGAAGGACCTACGAATAACACCGCTGTCCTTGAAAGGCGACTCAAACAAGTTCGTAATTTCCTCTTCATCTTGTTTGTGTCATTAGGAGTACCTGTTCTGAACATGGGAGACGAGTGTGGCCAGTCTTCTGGTGGTTCTCCTGCATATGATGACATGAAATCATTCAATTGGAGTGCTTTGAAAACAGGTTTTGGTAAACAAACGAcacaattcattttctttttaagttcaTTGAGAAGGAGGAGGAGTGATCTTCTTCAGAGTAGGAGCTTCTTACAAGAAGAAAACATTGAATGGCGTGGAAGTGACGGGGCTCCACCAAGATGGGAAGACCCATCCTGCAAGTTCCTGGCCATGACTTTGAAGGCTGAAATAACGGAGTTCCTGGAGAGCTCTGTATCTTCTGATACATTTGGGGATCTATTTATTGCTTTCAATGCAGCTGATCATCCAGAAACGGCAGTTTTACCCCTGCCTCTAGAAGGGATGTCATGGTACCGTTTAGTTGACACGGCTCTTCCATTTCCGGGGTTTTTCTTGACCAGTGGTGAAGTTGTCCCTGAGCAGATAACAGGTTTGGTTACTTATCAAATGAAGTCTTACAGCTGCACTTTGTTTGAGGCAAATTATCGTACCATTTAA 2586 0.4312 MASLVPCFSFSVIPRNQHKSKWSCFHKPFIQRKLHQPGLQNLVTPFSQKPTSKLCATSRLSVEETLQQLGTLTRPEYLKGASAYLFRTETGGGLVKVYVTKEKDRYSVYIEISSLDMSGGEGETLLLCWGVYRADSSCFVDLDSTGLSVNAATGMNVSPLVQTSRGKFAVELEFDAKHVPLYLSFFLMSSLDAGLEIRSHRRTRFCVPVGSLPGYPGPLGLSFNADGSVNFAIFSRHAESVVLCLYGDNGVEKPALELDLDPYVNRSGDIWHVSLESAKSFVSYGYRCRGALKQNKDESCAEHVVLDPYAKIVGNSYPDGLGSVKNLGWLGKEPVFDWGGDCHPDLSMEKLVVYRLNVKRFTQHESSQLPSGLAGTFTGLAKKVQHFKDLGVNAVLLEPVFMFDEEKGPYFPFHFFSLMHVYGPSGGPVSTIDSMKEMVKTMHANGIEVLVEVVFSNTAEIGALQGIDDLSYYYANGVGDLKVQSALNCNYPIVQNLILDSLRHWVTEFHIDGFSFINASHMLRGFHGEYLSRPPLVEAIAFDPVLSKTKIIADCWDPHDKVVKETRFPHWMRWAEINANFCIDVRNFLRGENFLSDLATRLCGSGDMFSGGRGPAFSFNYIARNFGLSLVDLVSFSSATELSWNCGEEGPTNNTAVLERRLKQVRNFLFILFVSLGVPVLNMGDECGQSSGGSPAYDDMKSFNWSALKTGFGKQTTQFIFFLSSLRRRRSDLLQSRSFLQEENIEWRGSDGAPPRWEDPSCKFLAMTLKAEITEFLESSVSSDTFGDLFIAFNAADHPETAVLPLPLEGMSWYRLVDTALPFPGFFLTSGEVVPEQITGLVTYQMKSYSCTLFEANYRTI 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1346 861 SMART aamy 355 730 IPR006047 GO:0005975
Ssu4g1346 861 Gene3D Glycosidases 332 742 - -
Ssu4g1346 861 CDD E_set_GDE_Isoamylase_N 218 355 IPR044505 -
Ssu4g1346 861 PANTHER GLYCOGEN DEBRANCHING ENZYME 61 858 - -
Ssu4g1346 861 Gene3D Immunoglobulins 207 324 IPR013783 -
Ssu4g1346 861 SUPERFAMILY (Trans)glycosidases 336 733 IPR017853 -
Ssu4g1346 861 SUPERFAMILY E set domains 213 343 IPR014756 -
Ssu4g1346 861 Coils Coil 723 743 - -
Ssu4g1346 861 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 218 310 IPR004193 GO:0004553|GO:0005975
Ssu4g1346 861 Gene3D - 743 860 IPR013780 -
Ssu4g1346 861 Pfam Alpha amylase, catalytic domain 375 459 IPR006047 GO:0005975
Ssu4g1346 861 PANTHER ISOAMYLASE 2, CHLOROPLASTIC 61 858 - -
Ssu4g1346 861 CDD AmyAc_plant_IsoA 347 735 IPR044096 GO:0019156|GO:0019252
Ssu4g1346 861 SUPERFAMILY Glycosyl hydrolase domain 743 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1346 Ssu-Chr4 22296347 22298932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1346 52 856 Glycoside Hydrolase AT1G03310 57.805 0.0 924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1346 K01214 - gmx:100777953 1477.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1346 4 22296347 22298932 Ssu4g1346 4 22296347 22298932 ECH