Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1342 ATGTTGCATGCCCTGAACCTTGGTGTGAGGGAGTTCCAACCAGGGAACTTCGTGTACGATGCTGAGGATATTCCATTCGGGACGCTGTGGTGGTTCTTTTATGTTGGAATTTCTTGCCTGCTTGTTCTCTTTGCTGGGATTATGTCTGGTCTCACCCTTGGTTTAATGTCTCTGGGCCTCGTTGACCTTGAGATTCTCCAGCGGAGTGGCTCCTCCACTGAGAAGAAGCAAGCTGCTGCTATTTCACCGGTTGTTCAGAAGCAGCATCAGTTGCTTGTGACCTTGCTTCTTTGTAACGCTTGTGCCATGGAGGCACTTCCAATTTACCTTGACAAAATTTTTCATCCTGTTCTAGCAATAGTGTTATCTGTGACTTTCGTTCTAGCTTTTGGTGAGGTTATCCCACAAGCTATATGCACAAGATATGGGCTCTATGTTGGTGCTAATTTTGTGGGGCTTGTACGTGTCCTAATGGTCATCTGTTATCCAATTGCTTACCCTATTGGAAAGGTTCTGGATGTTTTACTTGGACACAATCATGCACTGTTCAGGCGAGCACAGCTGAAAGCCCTTGTATCAATCCATAGCCAAGAGGCTGGTAAAGGAGGTGAACTCACTCATGATGAGACAACAATTATAAGTGGAGCACTAGATCTCACAGAGAAGACTGCAGAGGAGGCTATGACACCAATTGAATCTACATTTTCCTTGGATGTTGCTTCCAAATTGGACTGGGAAGCAATTGGGAAAATCCTTGCACGAGGTCATAGTCGTGTTCCTGTATACAGTGGAAGCCCCAAAAATATAATTGGCCTCTTACTAGTAAAAAACCTTCTTACTGTAAGAGCTGAAACAGAGACTCCAGTTAGTGCTGTTTCCATCCGCAGAATTCCAAGGGTTCCATCAGATATGCCTTTATATGATATTCTCAACGAGTTTCAAAAAGGAAGCAGCCATATGGCAGCTGTAGTCAAGGTTATAAGAGAGAGAAACGCCCCTCAGAAACCTGGTGACATTGAGAAATCCAAGGATAAAGAAGTCATCAAACATAGTTCTCAACTAACTATGCCATTACTAGCCAGGTTTTCTGAGAAATCAGAAAATGCTGTTATCAATATTGACAAACCTAGGCATGCTGCAGACcaacaatttcaaaaatatggCACTGCAACAAATGGTGTCCACCACTCTCCTGACAATATTGAAAATGGGGAGGAAGTTATTGGCATCATTACCCTGGAGGACGTGTTTGAAGAACTCCTTCAGGAAGAAATCGTGGATGAGACTGATGTGTATATAGATGTACATAGAAGAATACGTGTGGCTGCTGTAGCAGCTGCTACATCTGTGGCACGAGTTCCATCTGGCCGAAAGTTGACAGGTCACAAGCCTGTTATAAGTCAGAATCAGGGGAATTAA 1419 0.4334 MLHALNLGVREFQPGNFVYDAEDIPFGTLWWFFYVGISCLLVLFAGIMSGLTLGLMSLGLVDLEILQRSGSSTEKKQAAAISPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPVLAIVLSVTFVLAFGEVIPQAICTRYGLYVGANFVGLVRVLMVICYPIAYPIGKVLDVLLGHNHALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVASKLDWEAIGKILARGHSRVPVYSGSPKNIIGLLLVKNLLTVRAETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKVIRERNAPQKPGDIEKSKDKEVIKHSSQLTMPLLARFSEKSENAVINIDKPRHAADQQFQKYGTATNGVHHSPDNIENGEEVIGIITLEDVFEELLQEEIVDETDVYIDVHRRIRVAAVAAATSVARVPSGRKLTGHKPVISQNQGN 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1342 472 ProSiteProfiles CNNM transmembrane domain profile. 27 209 IPR002550 -
Ssu4g1342 472 Gene3D - 342 428 IPR046342 -
Ssu4g1342 472 PANTHER BNAC05G01850D PROTEIN 13 466 - -
Ssu4g1342 472 Gene3D - 209 341 IPR046342 -
Ssu4g1342 472 CDD CBS_pair_CorC_HlyC_assoc 223 324 IPR044751 -
Ssu4g1342 472 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 13 466 IPR045095 GO:0010960
Ssu4g1342 472 SUPERFAMILY CBS-domain pair 213 422 IPR046342 -
Ssu4g1342 472 Pfam Cyclin M transmembrane N-terminal domain 37 208 IPR002550 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1342 Ssu-Chr4 22194812 22205465 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1342 K16302 - gmx:100777230 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1342 4 22194812 22205465 Ssu4g1342 4 22194812 22205465 ECH