Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1335 ATGAAGCTCGTCAGGTTTCTCATGAAGTTGAACAACGAAACCGTATCAATCGAGCTCAAGAACGGCACAGTTGTTCACGGCACCATTACAgGTGTTGATATCAGTATGAATACACATTTGAAAACAGTTAAACTAACTCTGAAAGGGAAAAACCCAGTTACTTTGGATCATCTCAGTGTGAGAGGCAACAACATTCGTTATTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGACTCCTAGGATCAAGCCTAAGAAGCAAACTGCTGGGAAGCCTTTGGGGCGTGGGCGGGGGCGAGGACGTGGCCGTGGACGTGGTCGTGGCCGTTGA 345 0.4638 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRIKPKKQTAGKPLGRGRGRGRGRGRGRGR 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1335 114 CDD Sm_D1 2 91 IPR034102 GO:0000387
Ssu4g1335 114 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 110 IPR027141 GO:0006396
Ssu4g1335 114 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 1 110 - -
Ssu4g1335 114 MobiDBLite consensus disorder prediction 83 114 - -
Ssu4g1335 114 SUPERFAMILY Sm-like ribonucleoproteins 4 113 IPR010920 -
Ssu4g1335 114 SMART Sm3 5 70 IPR001163 -
Ssu4g1335 114 MobiDBLite consensus disorder prediction 93 114 - -
Ssu4g1335 114 Pfam LSM domain 5 69 IPR001163 -
Ssu4g1335 114 Gene3D - 50 82 - -
Ssu4g1335 114 Gene3D - 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1335 Ssu-Chr4 22072483 22076546 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1335 K11087 - csin:114287684 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1335 4 22072483 22076546 Ssu4g1335 4 22072483 22076546 ECH