Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1332 atgaatgtttGGTTCCAACCGAACGAGATGAGCAAGGGCGCAACTTCCCCGAAGGACTCAGGCGACAACACGGTGACCCACTTGgattttttcaagaaatttaaaCGCTTTACCCCTCTCGAGTCTTCCTTGGGCGTACTTGGCTTCTTCTTCGTCGCCACTCTCTTCATTGCTTCCTTCTTCTACTTGGATTACAAAGGGTTCCGCTCACGGGGTACCACTATCCTTGACTTGCacttttcatcatcatcatcatcatcatcttcttcttcttctgctgCTTCTGCTTCTGTTTCTGTTTCTGTTTCTGTCCCTGTTCAGTTTCTGAGCCAAGATGGTGATAACTGTGATATCTTTGATGGGAATTGGGTTTGGGATGAGACCTATCCGCTTTACCATTCCGCGAATTGTTCCTTCTTGGATCAAGGCTTTCGATGCTCCGAGAATGGGAGGCCTGACACCTTCTACACCAAGTGGCGATGGCAACCCAAAGATTGTAACTTGCCCAGATTTGATGCAAGGAAGATGTTGGAAAAGCTACGGGACAAGCGACTAGTTTTTGTAGGTGATTCAATTGGAAGGAACCAGTGGGAATCACTCCTTTGTATGCTCTCCTCTGCAATTGCAGACAAGACTCATGTCTACGAGGTTAATGGGAGCCCAATTACAAAGCACACAGGCTTCTTGGCATTCAAGTTTGAAGATTTCAACTGCACCATTGAATACTATCGATCACCATATCTTGTAGTGCAGGGACGGCCTCCTTCTGGTGCACCTGATGGGGTAAGAATGACCTTGAGAGTGGATCATATGGACTGGATTTCTCATAAGTGGAGAGATGCAGACGTGCTGGTTCTCAATGCTGGACATTGGTGGAATTATGAGAAAACTGTCAAAATGGGTTGTTACTTCCAAATGGGGAAGGAAGTGAAGATGAATATGACTACAGAGAATGCATTCAGAAAATCAATCGAGACAGTTGTTGATTGGATTGCCAAGGAAGTGAACGAGAACAGAACTCATGTCCTTTTCCGAACTTATGCTCCTGTCCATTTCAGGGGTGGTGACTGGAATACTGGTGGTGGTTGTCACATGGAAACATTACCTGATTTAGGCTCCTTGCCAGCAGTATCTGACATCCATTTCACGACTATCTCTGATGTCTTGTCAGAACGCACGAATAAATCAGAAGTTTTGAATTTGGACTTGCTTAATGTCACGCAAATGTCAATACGCAGAAGAGATGGCCACGCGTCTATTTACTATCTCGGACCACATCGCACAGCCTCTGTGCAGCGGCAAGACTGTAGCCATTGGTGTCTACCGGGTGTTCCTGATTCATGGAATGAGATTCTTTATGCACTTCTTCTTAAGCGGGAGGATTTATGTGAACGGAGACGGAATACAACAGAAGTTTCTCAAGTTCCTCAATAA 1434 0.4365 MNVWFQPNEMSKGATSPKDSGDNTVTHLDFFKKFKRFTPLESSLGVLGFFFVATLFIASFFYLDYKGFRSRGTTILDLHFSSSSSSSSSSSSAASASVSVSVSVPVQFLSQDGDNCDIFDGNWVWDETYPLYHSANCSFLDQGFRCSENGRPDTFYTKWRWQPKDCNLPRFDARKMLEKLRDKRLVFVGDSIGRNQWESLLCMLSSAIADKTHVYEVNGSPITKHTGFLAFKFEDFNCTIEYYRSPYLVVQGRPPSGAPDGVRMTLRVDHMDWISHKWRDADVLVLNAGHWWNYEKTVKMGCYFQMGKEVKMNMTTENAFRKSIETVVDWIAKEVNENRTHVLFRTYAPVHFRGGDWNTGGGCHMETLPDLGSLPAVSDIHFTTISDVLSERTNKSEVLNLDLLNVTQMSIRRRDGHASIYYLGPHRTASVQRQDCSHWCLPGVPDSWNEILYALLLKREDLCERRRNTTEVSQVPQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1332 477 PANTHER PMR5/CAS1P GDSL/SGNH-LIKE ACYL-ESTERASE FAMILY PROTEIN 31 464 - -
Ssu4g1332 477 Pfam PMR5 N terminal Domain 115 167 IPR025846 -
Ssu4g1332 477 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g1332 477 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 168 454 IPR026057 GO:0016740
Ssu4g1332 477 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 31 464 IPR029962 GO:0016413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1332 Ssu-Chr4 22027723 22031551 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1332 - - gmx:100779356 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1332 4 22027723 22031551 Ssu4g1332 4 22027723 22031551 ECH