Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1319 ATGAGTGTTCAGCTATCAGGCTTGTGGGTCCCCAACTCTCCACCAATACCCCCACACTTCGCTCGCAACCGTGGCAGATTCTCCCCTTCAGCTCTCTCATCTCAACCCCCCACCATTCAGATAATTGGTGTGAGTGGCCCCGGTTGGAGGGATAATGGATATGGCAATCCCAGCAGCAACTTGTTTGATGGGTGCCAAGGAGAGAGTGATCATTGGAGTGACCTTGACACTGATCTTTATCACTGGACAAAGGCATTGCGCCCTGTGCAGTGGTTTCCTGGTCATATAGCAAAAGCAGAAAAAGAACTGAAGGGGCAGCTCAAGTTGATGGATGTTGTGATAGAGGTGCGGGATGGACGAATTCCTATGTCCACAAGTCATCCACAGATGGATCTATGGCTTggaaatagaaagagaattttggttttaaacaGAGAAGACATGATATCAACTGCAGACCGCAATGCTTGGGCAGATTATTTTGCTAGGAATGGCACAAAGGTTGTCTTCTCCAATGGGCAGCTTGGAATGGGCACGATGAAGCTAGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATGTTAGGCGTAGAGCCAAAGGACTACTTCCTCGTGCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAATCATCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCGAGCAGCTTCCAGGCCAGGAGTCACAAGAGAATTGAAGTGGGTTCGTTTTGGGAAAGATCTTGAACTGCTGGATTCTCCTGGGATACTCCCAATGCGGATCAGTGATCAGTCGTCTGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGGGCCTATGATGTGGCTGATGTTGCTGCAATTCTTGTGCAGATGCTTACAAAGCTTCCCACAGTAGGCGGAGATGTTCTTTGTAAACGATACAAGATTGATGTAGATAGTCGATGTGGTAAAAtATTCGTAGAGAAGCTTGCAGTTCAAGTATTTAATGGAGATGTTCATCAAGCAGCATTCCGCGTCCTAGCAGATTTTAGGAAAGGTAAGTTTGGTTGGACTGCACTGGAGAGGCCTCCAAGGTGA 1098 0.459 MSVQLSGLWVPNSPPIPPHFARNRGRFSPSALSSQPPTIQIIGVSGPGWRDNGYGNPSSNLFDGCQGESDHWSDLDTDLYHWTKALRPVQWFPGHIAKAEKELKGQLKLMDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDMISTADRNAWADYFARNGTKVVFSNGQLGMGTMKLGRLAKELAADVNVRRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCRAASRPGVTRELKWVRFGKDLELLDSPGILPMRISDQSSAIKLAICDDIGERAYDVADVAAILVQMLTKLPTVGGDVLCKRYKIDVDSRCGKIFVEKLAVQVFNGDVHQAAFRVLADFRKGKFGWTALERPPR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1319 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 330 IPR027417 -
Ssu4g1319 365 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 23 365 - -
Ssu4g1319 365 Pfam 50S ribosome-binding GTPase 209 279 IPR006073 GO:0005525
Ssu4g1319 365 Gene3D - 89 262 IPR027417 -
Ssu4g1319 365 TIGRFAM GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 89 361 IPR019991 -
Ssu4g1319 365 CDD YlqF 91 262 - -
Ssu4g1319 365 PRINTS GTP1/OBG GTP-binding protein family signature 209 229 IPR006073 GO:0005525
Ssu4g1319 365 PRINTS GTP1/OBG GTP-binding protein family signature 255 270 IPR006073 GO:0005525
Ssu4g1319 365 Gene3D - 267 355 IPR023179 -
Ssu4g1319 365 PANTHER DAR GTPASE 3, CHLOROPLASTIC 23 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1319 Ssu-Chr4 21763734 21767668 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1319 K19828 - gmx:100784201 682.945