Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1314 ATGGCTTATCATTTGTGCTTCACTCTCAGTCACAGGCCTCCTTCTTCATGCACGAGACCTGCAGCAAAATCCTGTGACTCAGTCAATTTCTTCCTTCAATCATCTTATAATATTTTCGAGGAATGTGTTGCTGAAATATCTCGGGATAATGTGCCATTCGTCCAATGGCTTGAGACCGTGAAGGATGGTAATATAGACGAGGAAGCTCTTCACCAGGTTTTGGTAACAAACAAGATTCGAAAGAAGATAAATTCCGTCAAATTGATGTTGGATTCCAAAAAGGATGGAGAAATAACCATATCAGCTTATGACACAGCATGGGTTGCTCTCGTGAAAAATGTTCATGGTGGAAATTCACCTCAATTCCCGTCCTGTCTTGAATGGATTGCCAATAATCAGCTACCCGATGGTTCCTGGGGAGAAGGTGAATTATTCGAAGCCCATGATCGGATTCTTAACACATTAGCTTGTGTTATTGCGCTAAGATCCTGGAACATGCAACCTGAGAAGTGTGAGAAGGgaatgacattttttaaggaaaatttgTACAAGCTTCAAGATGAGAATGCAGAGCATATGCCAATCGGGTTCGAAGTTGCTTTCCCTTCTCTTCTCGATTTAGCTCAAAGTTTGAATATTGAAGTGCCACATGACTCTCCTATCTTGAAAGATATCTTTGCAATGAGAGACCTGAAGCTTAAACAAATACCGAAAGAAGTTTTGCACAAGGTGCCCACAACACTGCTCCATAGTTTGGAGGGAATGCCAAATTTGGACTGGAAACAACTTCTAAAGTTGCAATCCCAAAACGGCTCATTCTTGTTCTCTCCATCCTCAACAGCTTATGCTCTCATGCAGACTAAAGATGAAAACGCTCTTAAATACCTAGACAAAATAGTCAAGAGATTCAATGGCGGAGTACCAAATGTTTACCCGGTGGATTTGTTTGAACACATATGGGTTTTTGATCGACTGGATCGCCTTGGAATTTCAAGATACTTTCACTTAGAGATCAAAGATTGTGCGAGTTATGTTTCAAGATATTGGACTGAGAAGGGTATTTGCTGGGCAAGGAATTCAGAGGTTCAAGATATAGATGACACAGCAATGGGATTTAGACTACTAAGGTTGCATGGGCACCAAGTTTCACCCAATGTGTTTGAGCACTTTAAGAAAAATGGCGAGTTCTTCTGCTTTTCTGGGCAGTCAAACCAAGCTGTGACGGGAATGTTTAATCTTTATCGAGCATCTCAAGTGCTATTTCAAGGAGAGAAGATTCTTGAGGATGCCAAGAACTTCTCAGCCAAATTTTTAACTGAGAAACGTGCTGCCAATGAACTCCTAGATAAATGGATCATTTCCAAAGATTTACCTGGCGAGGTGGGTTACGCGCTGGACTTGCCCTGGTATGCCAGCTTACCCCGACTGGAGACAAGATTTTACCTTGAGCAATATGGTGGTAGCAGTGATGTTTGGATTGGCAAGACCCTTTATAGGATGCCCTACGTGAACAATGATGTTTATCTCGAGCTCGCAAAATTGGATTACAGCAACTGTCAAGCAGTGCATTGTGCGGAATGGGAAAAAATCAAAAGGTGGTACTTGGAAGCAGGACTAGAGGGGTTTGGATTGAGCAAAAGAAGTCTCCTATTTGCTTACTTCATAGCAGCAGCTAGCATATTTGAGCCTGAGAGGTCACGAGAGCGACTTGCATGGGCTAAAACCGCTGCATTGCTCGAGACACTGAGGTCTTACATAAAGGATGAAGAGACAAGGGGTGCTTTTGTAGATTTGTTCAACAACAGCATTAATGGACGAAACAACTCAAACGAGCGGTTGAACATGAACAAGAGAGAGGAGGAACTCCTGGACATTTTGCTGACAAATCTTGATTACCTTGGGTTCCAAATGTTTCGGAGTCACGGTCGTCAGGAATTTTCCCATTATTTGATTCAAATATGGCAAGGCTGGCTGTCAAGTTGGCAAAATGAAGCGAACAGCTTCGGAAGAGAAGCTGAGCTGATTGTGGAAATCATAAATGTGATGGCTGGCTATTGGTCAGAAGAACTGGAGCTCAATCCACAGTACCAGCGGTTGCTGGAAGTTACTAATAGAGTTTGCCATGGGCTCTGTAATTATCAAAGCGGCAAGGCTCATGATAGTGACAACGACAACCTCAGTACAACCAGCATCACTACCCCTCAAATAGAATCAGACATGCAAGAACTTGTGCAATTGGTGCTCCAAAATTCCTCAGATGGCGTGCACACCATTGTGAAGAATTCATTCCTCACAGTGGTCAAGGGCTTCTACTATGGAGCATACTGTGACCCGGAGACCATAAACTCTCATATTGAGAAAGTTCTCTTTCAAAAAGTGATGTAA 2385 0.4239 MAYHLCFTLSHRPPSSCTRPAAKSCDSVNFFLQSSYNIFEECVAEISRDNVPFVQWLETVKDGNIDEEALHQVLVTNKIRKKINSVKLMLDSKKDGEITISAYDTAWVALVKNVHGGNSPQFPSCLEWIANNQLPDGSWGEGELFEAHDRILNTLACVIALRSWNMQPEKCEKGMTFFKENLYKLQDENAEHMPIGFEVAFPSLLDLAQSLNIEVPHDSPILKDIFAMRDLKLKQIPKEVLHKVPTTLLHSLEGMPNLDWKQLLKLQSQNGSFLFSPSSTAYALMQTKDENALKYLDKIVKRFNGGVPNVYPVDLFEHIWVFDRLDRLGISRYFHLEIKDCASYVSRYWTEKGICWARNSEVQDIDDTAMGFRLLRLHGHQVSPNVFEHFKKNGEFFCFSGQSNQAVTGMFNLYRASQVLFQGEKILEDAKNFSAKFLTEKRAANELLDKWIISKDLPGEVGYALDLPWYASLPRLETRFYLEQYGGSSDVWIGKTLYRMPYVNNDVYLELAKLDYSNCQAVHCAEWEKIKRWYLEAGLEGFGLSKRSLLFAYFIAAASIFEPERSRERLAWAKTAALLETLRSYIKDEETRGAFVDLFNNSINGRNNSNERLNMNKREEELLDILLTNLDYLGFQMFRSHGRQEFSHYLIQIWQGWLSSWQNEANSFGREAELIVEIINVMAGYWSEELELNPQYQRLLEVTNRVCHGLCNYQSGKAHDSDNDNLSTTSITTPQIESDMQELVQLVLQNSSDGVHTIVKNSFLTVVKGFYYGAYCDPETINSHIEKVLFQKVM 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1314 794 Pfam Terpene synthase family, metal binding domain 509 668 IPR005630 GO:0000287|GO:0010333|GO:0016829
Ssu4g1314 794 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 72 791 - -
Ssu4g1314 794 Gene3D Farnesyl Diphosphate Synthase 519 794 IPR008949 -
Ssu4g1314 794 SUPERFAMILY Terpenoid synthases 504 752 IPR008949 -
Ssu4g1314 794 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 270 489 IPR008930 -
Ssu4g1314 794 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 99 181 IPR008930 -
Ssu4g1314 794 Gene3D - 102 314 - -
Ssu4g1314 794 SFLD Terpene Cyclase Like 1 N-term - Enzymatic 73 499 - -
Ssu4g1314 794 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 72 791 - -
Ssu4g1314 794 Gene3D - 85 516 IPR036965 GO:0010333|GO:0016829
Ssu4g1314 794 Pfam Terpene synthase, N-terminal domain 259 465 IPR001906 GO:0010333|GO:0016829
Ssu4g1314 794 SFLD Terpene Cyclase Like 1 N-term 73 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1314 Ssu-Chr4 21553012 21561528 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1314 K04120 - gmx:100807519 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1314 4 21553012 21561528 Ssu4g1314 4 21553012 21561528 ECH