Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1312 ATGGCTTCTCACTTCTCCACCCACTGCCACCTcccctctttctcttcttctaacCATTTCCCTtttccatcttcttcttcttctatcttTCTTCACCACTTCGCCGAATCCTCTGTGGgtGCTGTGTCGTCCGAGACTAACGACAAGCAAGAGATAAGATGCAGAGCTATATCCAAATCACGAACTCAAGAATATCCAGACATATTTCAGGGTAGTCTGGCAACGTTAAAGTTGCGTGAGATTAATGTGGAAGATGACATAGAAGAGGAGCAAGACATTGGGgttttggtggCGAACGAGATAAAGAAGCGAGTGGACACTATCAAATCGATATTGGGTTCCATGGAAGATGGAGAGATAAGCATATCAGCTTATGACACAGCTTGGGTTGCTCTGGTAGAAGATGTTCATAGAAGTGGTACCCCCCAATTTCCGTCGAGTCTTGATTGGATAGCAAAAAATCAACTTCCAGATGGTTCATGGGGTGATAAGGAATTATTTTCAGCCCATGATCGGATTATTAACACGTTGGCCTGTGTTATTGCATTAAAATCATGGAATAAGCACCCTGAAAAGTGTGAGAAAGGAATGGCATTTTTTAAAGAGAATCTCAACAAGCTTCAGAATGAGAATGTGGAGCATATGCCAATCGGGTTTGAAGTTGCTTTCCCTTCACTTCTTGATATGGCTCGTGGGTTGAACATTGAAGTGCCGGATAATTCCCCTATCTTGAACAAAATCTTCGCAATGAGAAACGTAAAACTCACAAGAATACCAAGAGAGATGATGCATAAAGTGCCCACAAGTCTGCTTCATAGCTTGGAAGGCATGTCAGGCCTTGACTGGAAAGAACTTCTAAAATTGCAGTCTCAAGACGGGTCCTTCTTGTTTTCTCCGTCCTCCACTGCCTTTGCGCTCATGCAAACTAAAGATGAAAATTGCCACAAATACTTGAATAAAGTGGTCAAGAAGTTCAACGGGGGAGTTCCAAACGTATATCCAGTGGATTTGTTCGAACATATTTGGGTGGTTGATAGGCTGGAACGCCTCGGAATATCTCGGTATTTTCAGCAAGAGATCCAAGACTGTTTGAGTTATGTTCACAGATATTGGACTGAAAAGGGTATTTGTTGGGCAAGAAATTCAAATGTTCAAGACATTGATGACACAGCAATGGCTTTCAGATTACTAAGATTACACGGCCACCAAGTCTCAGCCAACGTATTTAAACACTTTGAGAGAAACGGTGAATTTTTCTGCTTTACGGGGCAGACCACGCAAGCGGTGACAGGAATGTTTAATCTGTATAGAGCTACTCAAGTAATGTTCCCGGGAGAGAAAATTCTTGAACATGCAAAGCACTTCTCTGCCAAATTTTTGAGGGAGAAGCGAGCAGCAAATGAGCTCGTAGATAAATGGATCATAATGAAGAACTTGGCAGAAGAGGTGGCGTATGCGTTGGACGTGCCATGGTATGCAAGCTTACCCCGAGTGGAGACAAGATTCTACATTGATCAATACGGTGGTGAGAGTGACGTATGGATAGGCAAAACCCTTTATAGGATGGCCTATGTGAACAACAATAACTATCTCGAGCTTGCTAAATTAGATTACAACAATTGCCAGGCACTGCATCTAACAGAGTGGGGGAGAATTCAGAAGTGGTACTCAGAATCTAGATTGGGAGAGTTTGGAATGAACAGAAGAACTCTTCTGTTGGCCTATTTTTTGGCAGCAGCAAGCATATTTGAGCCTGAAAGGTCTCATGTGAGACTAGCGTGGGCCAAAACCACAGCCTTGCTTGAGACCATAACATCCTATGTTAGTGATGCAGAAATGAGGAAAGCTTTTGTCAAAAAATTCATTGACTGCATTAACAGGCGAGACTACTCCATTGGCTGGAGGTTAAACAGGAACAGAACAGGACATGGACTTGCGGAAACTTTGGTTGCCACCATAGATCAAATCTCGTGGGATATACTAGTGTCCCACGGTCATGAAATTGGATATGATATGCATCGTAGTTGGAAAAAGTGGCTTTCAAGTTGGCAACATGAAGGAGACAAATGTGAAGGACAAGCAGAGATTTTGGCGCAGATAATAAACCTATGTGCCGGGCATTGGATTTCTGAGGAACAAGTGTTCGATCCACAATATCAGAGTCTCCTTCAACTCACTAACACAATCTGCCATAGTCTCCGTTGTCATCAAAAGGACAAGGAACTCGAGAGCGGCAGCTGTGGTACGTATGTAAACGGCATCACCACCCCAGAAGCAGAGACAAAAATGCAAGAACTCGTGCAATTGGCGTTCCAAAAATCTCCAACTGGCATTGATTTCAATATCAAGAATACCTTCCTCACAGTGGCCAAGAGTTTTTACTATACAGCTTTCTGTGATTCAAGGACCATCAACTTCCATATTGCCAAAGTTCTGTTTGATAAAGTcgtttaa 2454 0.4181 MASHFSTHCHLPSFSSSNHFPFPSSSSSIFLHHFAESSVGAVSSETNDKQEIRCRAISKSRTQEYPDIFQGSLATLKLREINVEDDIEEEQDIGVLVANEIKKRVDTIKSILGSMEDGEISISAYDTAWVALVEDVHRSGTPQFPSSLDWIAKNQLPDGSWGDKELFSAHDRIINTLACVIALKSWNKHPEKCEKGMAFFKENLNKLQNENVEHMPIGFEVAFPSLLDMARGLNIEVPDNSPILNKIFAMRNVKLTRIPREMMHKVPTSLLHSLEGMSGLDWKELLKLQSQDGSFLFSPSSTAFALMQTKDENCHKYLNKVVKKFNGGVPNVYPVDLFEHIWVVDRLERLGISRYFQQEIQDCLSYVHRYWTEKGICWARNSNVQDIDDTAMAFRLLRLHGHQVSANVFKHFERNGEFFCFTGQTTQAVTGMFNLYRATQVMFPGEKILEHAKHFSAKFLREKRAANELVDKWIIMKNLAEEVAYALDVPWYASLPRVETRFYIDQYGGESDVWIGKTLYRMAYVNNNNYLELAKLDYNNCQALHLTEWGRIQKWYSESRLGEFGMNRRTLLLAYFLAAASIFEPERSHVRLAWAKTTALLETITSYVSDAEMRKAFVKKFIDCINRRDYSIGWRLNRNRTGHGLAETLVATIDQISWDILVSHGHEIGYDMHRSWKKWLSSWQHEGDKCEGQAEILAQIINLCAGHWISEEQVFDPQYQSLLQLTNTICHSLRCHQKDKELESGSCGTYVNGITTPEAETKMQELVQLAFQKSPTGIDFNIKNTFLTVAKSFYYTAFCDSRTINFHIAKVLFDKVV 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1312 817 Gene3D - 107 539 IPR036965 GO:0010333|GO:0016829
Ssu4g1312 817 Pfam Terpene synthase, N-terminal domain 281 487 IPR001906 GO:0010333|GO:0016829
Ssu4g1312 817 SFLD Terpene Cyclase Like 1 N-term - Enzymatic 98 521 - -
Ssu4g1312 817 SUPERFAMILY Terpenoid synthases 526 795 IPR008949 -
Ssu4g1312 817 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 118 209 IPR008930 -
Ssu4g1312 817 Gene3D - 124 336 - -
Ssu4g1312 817 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 85 813 - -
Ssu4g1312 817 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 85 813 - -
Ssu4g1312 817 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 292 512 IPR008930 -
Ssu4g1312 817 Pfam Terpene synthase family, metal binding domain 531 690 IPR005630 GO:0000287|GO:0010333|GO:0016829
Ssu4g1312 817 SFLD Terpene Cyclase Like 1 N-term 98 521 - -
Ssu4g1312 817 Gene3D Farnesyl Diphosphate Synthase 541 817 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1312 Ssu-Chr4 21463422 21473551 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1312 K04120 - gmx:100784193 1516.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1312 4 21463422 21473551 Ssu4g1312 4 21463422 21473551 ECH