Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1309 ATGGATTCCATTGTCCACCACAGCGCGTCATCAACAGCGTCAATGGCGAAGCGTCCCTGCCCCTCGCAAAACCCTAGAGTGCAGAACCTGAACGAGGTGGAGCGTCGCCTGGACGGGTTTCTCTCCCTCTCCGACCACCCTTCTCTCTCCCTGGATCTCTCCTTCGAGAGGCTTCTCCAATCGGTTCCCTCCGACTCCGATCTCATCGATCGCGCCATCAAAATGGGCTCTCTCCTCCTCGACGCCGCCAAACACTCCTCCAGAAAACGCGCTTCCAACCACAATTCCCTCGCCTGGCCTCTCCCTCCCGACCTCACCATCAAGGTCTTCTCAATGCTTGATACCCAAAGCCTGTGCTATGCGTCAGCTACTTGTTCACTGTTTAGCAAATGTGCTAAAGATCCTCTGTGCTATGCAAATCTTGATTTGACAACACTTGTTCCGAAGGTTAACAATGCGGTAGTTGCCACGATGATTCAGCGAGCTGGGAAGGCACTAAGcTCTCTTAAGCTTGGTGTTGTCCCTGGCGCTACTACTTCACTTGGATCTTCTCCACCATTTGTTTGTACCATCAGAAATGCTATTGTAGAAGTATCTAACTTTTCATGGAATGATAAGAGATCTCGGCAAGGGAGAGAGTCGTCCATTCTTACAAGATGCTGTTTAAGCCCTTTAAGTGCGGATGGTGGTGCCCCGGGGGCTCTTTTGAGAAAGTTGCACTTGTACAATGTTGAGAGAATGGATAATGCATCCCTTCGTGCGGCATTGTCATCATGCCCTTCTCTCCTCGATCTGGAAATTGTTGGGCTCCATGTTGAATTGAGGCAAACATTAATGTCAGTAAGTGCAAACTGCCACTTGATAGAGCGTTTGTTTTTTGAGTCTTCTAAAACAGGTAGAGATGACAGCTTGAAAGCACAAACCTGTTCTGAGCTAGTAAACAATTGTCCTCATCTAACTTCTTTATCCCTTAGAGGGTTTAAGCTACATGATTGTAAAGTTCGCATACTGGTTAAGGGATTTCGGAAACTGAAATATGTTGACTTTTCAACATCCTATTCAATCACTGGTAACTTCTTAAGAAACCTTGGAAACTGCAATGGTGGGAATTTACTTGAGGTCTTAATTTTAAGGGATTGCATGCATCTCAAAGAGACGGAAGTCGCTAAGCTGTTGACTGCAATTCTTGCAGGAGATTTCAAATTGCTTGTACATCTTGACATATCCAATAGGGAAGGCTTAGCATCTGAGGCTGATTGGTATCACAGGTGCTACAACTCCAGTAGTATGCCTATAAAGCAGGTTTTGGAAGCAAGGCCTGATATGTATCTGGAGGCTGAATATCCATCAGAAGGAAGTTACATTGAGCCATTTGATGCTGATATAAATAGCGAGATAAGTCTGCCATCACAATTGAGCAGCCACACGTCAGATGGATCAATTTTTATGAGTACATCTGAAAGCAGCTACAATAGTGATCCGGGCAGTGGCAATGAGGATGGTCAGGATGCCAACTACGTGATTTATGAGGAAAGCTCAGACGAGATTGACTTTCTGGCCCTCTAG 1566 0.4591 MDSIVHHSASSTASMAKRPCPSQNPRVQNLNEVERRLDGFLSLSDHPSLSLDLSFERLLQSVPSDSDLIDRAIKMGSLLLDAAKHSSRKRASNHNSLAWPLPPDLTIKVFSMLDTQSLCYASATCSLFSKCAKDPLCYANLDLTTLVPKVNNAVVATMIQRAGKALSSLKLGVVPGATTSLGSSPPFVCTIRNAIVEVSNFSWNDKRSRQGRESSILTRCCLSPLSADGGAPGALLRKLHLYNVERMDNASLRAALSSCPSLLDLEIVGLHVELRQTLMSVSANCHLIERLFFESSKTGRDDSLKAQTCSELVNNCPHLTSLSLRGFKLHDCKVRILVKGFRKLKYVDFSTSYSITGNFLRNLGNCNGGNLLEVLILRDCMHLKETEVAKLLTAILAGDFKLLVHLDISNREGLASEADWYHRCYNSSSMPIKQVLEARPDMYLEAEYPSEGSYIEPFDADINSEISLPSQLSSHTSDGSIFMSTSESSYNSDPGSGNEDGQDANYVIYEESSDEIDFLAL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1309 521 MobiDBLite consensus disorder prediction 470 503 - -
Ssu4g1309 521 MobiDBLite consensus disorder prediction 1 26 - -
Ssu4g1309 521 Pfam F-box-like 101 143 IPR001810 GO:0005515
Ssu4g1309 521 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 32 461 - -
Ssu4g1309 521 Gene3D Ribonuclease Inhibitor 94 396 IPR032675 -
Ssu4g1309 521 SUPERFAMILY F-box domain 88 144 IPR036047 GO:0005515
Ssu4g1309 521 PANTHER F-BOX SKIP17-LIKE PROTEIN 32 461 - -
Ssu4g1309 521 SUPERFAMILY RNI-like 220 419 - -
Ssu4g1309 521 MobiDBLite consensus disorder prediction 470 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1309 Ssu-Chr4 21382753 21389996 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1309 K10268 - gmx:100786317 916.761