Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1300 ATGGAAACGGAATCGAAGAAGGAAATGGAAGTGGCTCCGGCCCTCATCGCCGTTCACCCCGACCAATGCTCCGTCGCCGTCGCGGTTGGCGCGCACCTCCGCGTCTTCGACCTCGTTGGCGGTTGTGCAGCTTCTCTAGTGGACGACTCTGATGGCGTCCCGTTCCACAAGGATAACATCAGAGCCATTCGCTTCGGCGCGAAAGGAACACTCTTCGCATCCGCCGGCGACGATAAAACCGTCAAGGTCTGGTCAACACAGTCGTGGCGTTGCATCTCCACCGTGTCCTCCGAGAAGAGAGTAACCGCTGTTGCCATTAGCAACGACGGAACCTTCGTGTGCTTCGCCGACAAGTTCGGCGTTGTTTGGGTTGTGGATCTCCATCCACCGTTAGGCGATAAGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGGAATTTTCACCGGACGGTCGCTTTATTTTAAGTGCTGATCGTGATTTCAAAATTCGCGTTACTAATTTTCCCAACAAGCCCTTAGATGGAGCTCACCAGATACAAAGTTTCTGTCTCGGTCATACAGAGTTTGTTTCCTGCCTTGCCTTTGTTCAAGCTCAGGAATGCCCTCAAGGCCTTCTTCTCTCTGGCAGCGGTGATTCCACGGTTCGGTTGTGGGATATTGACTATGGAGCACTCCTAGATACTTGTGAGGTTGCAATTAAgGCAGGACTTTTAGAGTCTAATGGTAAAGCAGAGGAGCATTGTCATGCTGTTACTGATTTATGCACCATCCTGGATGGTTTGCTTGTTGCAGTGGCCATTCAGAGCTTGCAGGGAATAGTATTGTTGAGTTGCAATGTTTCTGCAAAAACTCTTTCTGTTGCCAAGGTGGTTTCCGTTGCTGGAGAGGCCTTTGTCCCTACCTGCTTGGGGAGCAGCCCCTCCACAGGGAAATTGTGGATGGTTACTGGTGTCTCTAGTTTACCTGGTTGTAATAACCCCTCTTTGGCTTGTGTCCGAGTAATTTCTGTTATTGATGTTGAGCAAGAGCCGGTTGTTCTGGGAGATGATAACATACCTGGGGGACAAAAGCTGCTAGAAACGTTGCAAGGAACTGCGTCCGTTGATGACAATGCTTTTGTAGCAGCAGCTGAAGCTGTCAAAACAGCAATGTGCAacctattaataaaaaaacaataccCTTCAGAGAGCAGAGAATCTAGGAAGAAAAgcagaaatgaaagaaaactcaAGGGCTag 1254 0.4801 METESKKEMEVAPALIAVHPDQCSVAVAVGAHLRVFDLVGGCAASLVDDSDGVPFHKDNIRAIRFGAKGTLFASAGDDKTVKVWSTQSWRCISTVSSEKRVTAVAISNDGTFVCFADKFGVVWVVDLHPPLGDKKPAPLLSHYCSIITSLEFSPDGRFILSADRDFKIRVTNFPNKPLDGAHQIQSFCLGHTEFVSCLAFVQAQECPQGLLLSGSGDSTVRLWDIDYGALLDTCEVAIKAGLLESNGKAEEHCHAVTDLCTILDGLLVAVAIQSLQGIVLLSCNVSAKTLSVAKVVSVAGEAFVPTCLGSSPSTGKLWMVTGVSSLPGCNNPSLACVRVISVIDVEQEPVVLGDDNIPGGQKLLETLQGTASVDDNAFVAAAEAVKTAMCNLLIKKQYPSESRESRKKSRNERKLKG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1300 417 Gene3D - 99 384 IPR015943 GO:0005515
Ssu4g1300 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 226 - -
Ssu4g1300 417 Gene3D - 14 98 IPR015943 GO:0005515
Ssu4g1300 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 88 - -
Ssu4g1300 417 PANTHER WD40 REPEAT PROTEIN 4 14 414 IPR028884 GO:0036265
Ssu4g1300 417 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 22 409 IPR028884 GO:0036265
Ssu4g1300 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 233 IPR001680 GO:0005515
Ssu4g1300 417 ProSitePatterns Trp-Asp (WD) repeats signature. 211 225 IPR019775 -
Ssu4g1300 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Ssu4g1300 417 SMART WD40_4 88 126 IPR001680 GO:0005515
Ssu4g1300 417 SMART WD40_4 180 224 IPR001680 GO:0005515
Ssu4g1300 417 SMART WD40_4 133 172 IPR001680 GO:0005515
Ssu4g1300 417 SMART WD40_4 39 85 IPR001680 GO:0005515
Ssu4g1300 417 SUPERFAMILY WD40 repeat-like 16 270 IPR036322 GO:0005515
Ssu4g1300 417 Pfam WD domain, G-beta repeat 56 85 IPR001680 GO:0005515
Ssu4g1300 417 Pfam WD domain, G-beta repeat 141 170 IPR001680 GO:0005515
Ssu4g1300 417 Pfam WD domain, G-beta repeat 188 224 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1300 Ssu-Chr4 21269686 21272128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1300 56 231 Miscellaneous Gene Families AT5G08390 24.581 4.83e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1300 K15443 - gmx:100809122 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1300 4 21269686 21272128 Ssu4g1300 4 21269686 21272128 ECH