Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1299 atgtcTGGACTGATTGAAGGACTTCCTGACGCTGTTGCAATTAGGTGCCTTGCACGGGTTCCCTTCTACCTCCACCCGATGTTAGAGCTTGTCTCTCGTTCTTGGAAAGCAGCAATTCGTAGCCCTGAACTATTTAAAGCTCGGCAGGAGGTTGGTTCGACTGAGGATCTGCTATGTGTCTGTGCTTTTGATCCAGAGAACTTATGGCAGCTATATGACCCTATGCGAGATCTCTGGATTACACTTCCTGTTCTTCCCTCAAAGATCAGGCACCTTTCCCACTTTGGTGCTGTTTCCACTGCGGGAAAGTTGTTTGTGATTGGTGGTGGAAGTGATGCTGTTGATCCTTTGACTGGGGACCAAGATGGTTGTTTTGCAACGGATGAAGTCTGGTCATATGACCCTGTAGTCCGGCAGTGGGCCCCTCGTGCATCAATGCTTGTTCCTCGTTCTATGTTTGCTTGCTGTGTTTTGAATGGGAAAATTGTTGTGGCTGGGGGCTTCACTAGCTGCAGAAAATCAATATCTCAAGCAGAAATGTATGATCCTGACAAGGATGCTTGGATTCCAATGCCTGATCTTCATCGCACTCATAATTCGGCCTGTTCAGGAGTAGTGATTGGTGGAAAGGTGCATGTACTGCACAAGGATATGTCAACAGTGCAAGTTTTAGACAATGCAGGGCCTGGGTGGACCGTTGAGGAATGTGCATGGCTCCAAGGTCCGATGGCAGTTGTCCGTGATGCACTTTGTGTGATGAGCCATGGATTAATCTTCAAGCAGGACAAAGAAGGGAGAAGGGTTGTAGGTTCAGCATATGAGTTTCGAAAGAGAATTGGATTTGCAATGACCGGACTAGGTGATGATTTATACGTGATTGGAGGCTTCATTGGCCCTGACAGATGGAATTGGGACATTAAGCCATTATCCGAAGTTGATATTCTCACACTTGGAAGCGAGAGACCAACTTGGCGCCAGGCAGGTCCAATGACACGGTGTCGTGGTACTATTCTTGGTTGTACGCTGCTGAGAATTTAG 1038 0.473 MSGLIEGLPDAVAIRCLARVPFYLHPMLELVSRSWKAAIRSPELFKARQEVGSTEDLLCVCAFDPENLWQLYDPMRDLWITLPVLPSKIRHLSHFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATDEVWSYDPVVRQWAPRASMLVPRSMFACCVLNGKIVVAGGFTSCRKSISQAEMYDPDKDAWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAGPGWTVEECAWLQGPMAVVRDALCVMSHGLIFKQDKEGRRVVGSAYEFRKRIGFAMTGLGDDLYVIGGFIGPDRWNWDIKPLSEVDILTLGSERPTWRQAGPMTRCRGTILGCTLLRI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1299 345 SMART kelc_smart 161 208 IPR006652 GO:0005515
Ssu4g1299 345 SMART kelc_smart 289 344 IPR006652 GO:0005515
Ssu4g1299 345 SMART kelc_smart 103 160 IPR006652 GO:0005515
Ssu4g1299 345 Pfam Kelch motif 149 194 IPR006652 GO:0005515
Ssu4g1299 345 Pfam Kelch motif 92 146 IPR006652 GO:0005515
Ssu4g1299 345 SUPERFAMILY Kelch motif 61 334 IPR015915 GO:0005515
Ssu4g1299 345 Gene3D - 63 343 IPR015915 GO:0005515
Ssu4g1299 345 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 2 345 - -
Ssu4g1299 345 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP30 2 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1299 Ssu-Chr4 21265980 21267017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1299 8 188 Miscellaneous Gene Families AT4G33900 30.000 2.61e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1299 - - gmx:100800954 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1299 4 21265980 21267017 Ssu4g1299 4 21265980 21267017 ECH