Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1297 ATGGAACAGCTGAGACCCAGAGCTTTTCAAATAAGAGTGATACTAGCAGCCCTTATAGTGGCTTCAGTAAATTTGGTTAATGGGCAGGTTAGTACGGCCTGCACAACCTCTATGATCAGCAGTTTCACACCGTGCGCCAACATCATTACAGGAAGCACTAATAATGGTCTAGTGCCACCAAGTACTTGTTGTGATTCATTAAGGTCTTTGATGAGCACTAATATGGATTGTGCTTGCCTGGTAATCTCTGCCAATGCTCCATTTTTCCAACTACCCATTACCCAAGCTCTTGCCCTCTCCCTATCACAAGCATGCAACATTAATGGAGTTCCCATACAGTGCAAAGCTTCTGGTTCTCCTTTACCAGCTCCAGGCCCTGCAGTTCTTGGACCGAACGGCCCAACTCTCCCTTCAATCGCCACATCTCCCTTTAGCCCACAAGTTTCAAAAATGGTGTCTCTAGGCGAAGCACACAAATATGAGAACGAGCAATTGGCACGAGAACTGACACCAGCATCATCTCCAGTGGAAGTAGAAGCGCCCACTAAAATTCCACAAATTCGACTAGTGTTGACTCCACGTCCTTCGCCATCTCATTCATATTTTGTTTCCCCGTCACCTTTTGCATTCCTCAtaggaatcatgatttttgTCATCTAG 660 0.4485 MEQLRPRAFQIRVILAALIVASVNLVNGQVSTACTTSMISSFTPCANIITGSTNNGLVPPSTCCDSLRSLMSTNMDCACLVISANAPFFQLPITQALALSLSQACNINGVPIQCKASGSPLPAPGPAVLGPNGPTLPSIATSPFSPQVSKMVSLGEAHKYENEQLARELTPASSPVEVEAPTKIPQIRLVLTPRPSPSHSYFVSPSPFAFLIGIMIFVI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1297 219 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 12 217 IPR043325 -
Ssu4g1297 219 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Ssu4g1297 219 PANTHER CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE 12 217 - -
Ssu4g1297 219 CDD AAI_LTSS 42 107 - -
Ssu4g1297 219 Gene3D - 31 114 IPR036312 -
Ssu4g1297 219 Pfam Probable lipid transfer 17 114 IPR016140 -
Ssu4g1297 219 SMART aai_6 34 114 IPR016140 -
Ssu4g1297 219 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 37 114 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1297 Ssu-Chr4 21244917 21246689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1297 29 125 Lipid Metabolism Gene Families AT2G48140 56.701 2.30e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1297 - - gmx:100786841 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1297 4 21244917 21246689 Ssu4g1297 4 21244917 21246689 ECH