Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1296 ATGCTTGCAATAAGTAAGCTCAAAACAGGACCTGATATCCCTTTTGTTTTATGTGTCATGGTTGCTAATGGCAACTATGGCACAGCCCGAGTTTCCAATAGCAAAAGTGTCCAGTCTATTGTTAAGTCTGTTGGTCCTTATTTACCCAACTCAAGATTACAAGCATTTCTGCACAGGTCAGAGAATAAATTTACCCTTCAAGGAGTATATTTCTCTAGTGTTGCTGAAAGAATCCTGGTCCAGGCTCAAGACCCAGCCAAAGTTAGTTTGGAAATACAAAATGCTATCAGTGCAAATCAATTAGATTATTCATGGAAATTATTTGAGCAGCATATGCACATGGATGGATTTCCCAGAAAATCTGTCATCAGCCAGCTTGTAACAAGTTATGTGGACAGCCTTGATATGCAATGGCTAGGAAAAGCTTATGAATTGGTAGAGCGTGCTATTGAGGAAGGTAAACAAGACTTGTTAGAAAAGGAGGTGCTTATCTACCTTAGCTTTGGCCTTGCAAAAGCCAGACTACCAGTTCCAGCATCAACCATTTTAAGAAAGATGATAGATATGGAGCATTTCCCCCCAGTCACTGGTTGGTCTGCAGTTTTGGCACACTTGTCACAAACAGCAGATGGGAGCTACCTTGCTGCTGAGTTGATTCTTGAAATAGGTTATTTGTTTCAGAACAATAGAATAGATCCGCGTAAAAAGAGCAATACACCTTTGATAGCCATGAAACCAAACACTGCTGCTTTTAACATTGCTTTGGCAGGGTGCCTCTTATTTGAGACATCTAGGAAGGCAGAGCAGCTTCTCGATATGATGCCTCGAATTGGTGTCAAAGCTGATGCAAACCTACTGATAATAATGGCACGTGTATATGAGAGAAATGGGCGAAGAGAAGAGCTCAAGAGGCTGCAAAGGTACATAGAGGAAGCTCCAAATCTAACTGATTTACAGTTCCGACAGTTCTATAATTGTTTGCTGACATGCCATTTGAAATATGGGGATCTAGATTCTGCATCAAACATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCTCTTGCAGCTGccaaatttatgataaatgctGCTGAAATTGATCATAACCATTCTCCTGGACTGGCTTCTGTGCATAGTTTGAACAACAGTAAAgatttaaatagttttgaaaataacaggCCAATTACAAATGCTGTATTATCTTATGAGGAGTTCTCTAAAGATAGAAACTTCTCAAAGCTTGAAGCAGAGTCAAAAGCTATACTTGGTTCTTTATTAGCTAAGTTGCAGATGCAGGTGGACTTGATTACAACCAAACGTGGTATACTGCAACCAACTGAAACAATTTATGTGAAATTAGTTAAAGCTTTTCTAGAAGCTGGCAAGACCAAGGATTTAGCAGTGTTTCTTCTCAAGGCAGAAAGAGAAGATTCTCCATTTTCCAATGAAAACTCAGCCATGGTTCATGTTATTAATGCATGCATTTCACTTGGATGGCTGGATCAAGCACATGATCTCCTTGATGAGATGCGTCTAGCCGGAGTTAGAACCGGTTCATCTGTATACTCTTCTCTTCTGAAAGCATATTGCCGAGCGAATAGGGCCGCAGAAGTCACATCACTTCTGAGAGATGCTAGGATAGCTGGTATCCAGCTTGACTCAAGCTCTTATGAGGCAATGATCCAATCCAGGGTACTCCAGCAAGACACACAGGGAGCACTCCAATTATTTAAAGAGAGGAAAGAGTCTAGAATTCCAAAAGTCACTCAAAAGAGTGGTGCAGAGACAGATGAAGCTGGACTAATGACCAAGCTGTTGCAGGAAATCAAGGAAGGGCAGAGACTGGATTGTGGAGTTCATGACTGGAATAATGTAATCCACTTTTTTTGCAAGAAGAGACTGATGCAAGATGCAGAAAAAGCTCTAAAGAAGATGAGAAGCTTAGGCCACTCGCCAAATGTGCAAACTTTCCATTCAATGGTCACTGGGTATGCTGCCGTTGGAGGGAAATATCAAGAAGTGACAGAACTGTGGGGTGAGATGAAAGCTCTTGCTTCTTCTGTCTCCATGAAGTTTGATCAGGAACTTCTCGATTCTGTGCTGTATACATTTGTGAGAGGTGGATTCTTTGTTCGAGCCAATGAAGTTGTAGCGATGATGGAAAAAGGAAACATGTTTGTTGACAAGTACAAGTACCGAATGCTATTCTTGAAATATCATAAATCACTTTACAAAGGGAAGGCTCCGAAATTTCAGACGGAATCCCAACTAAACAAAAGGGAAGCAGCCTTGGCTTTTAAAAGGTGGATAGGCTTAACTTGA 2334 0.4032 MLAISKLKTGPDIPFVLCVMVANGNYGTARVSNSKSVQSIVKSVGPYLPNSRLQAFLHRSENKFTLQGVYFSSVAERILVQAQDPAKVSLEIQNAISANQLDYSWKLFEQHMHMDGFPRKSVISQLVTSYVDSLDMQWLGKAYELVERAIEEGKQDLLEKEVLIYLSFGLAKARLPVPASTILRKMIDMEHFPPVTGWSAVLAHLSQTADGSYLAAELILEIGYLFQNNRIDPRKKSNTPLIAMKPNTAAFNIALAGCLLFETSRKAEQLLDMMPRIGVKADANLLIIMARVYERNGRREELKRLQRYIEEAPNLTDLQFRQFYNCLLTCHLKYGDLDSASNMVLEMLRKAKEARNSLAAAKFMINAAEIDHNHSPGLASVHSLNNSKDLNSFENNRPITNAVLSYEEFSKDRNFSKLEAESKAILGSLLAKLQMQVDLITTKRGILQPTETIYVKLVKAFLEAGKTKDLAVFLLKAEREDSPFSNENSAMVHVINACISLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCRANRAAEVTSLLRDARIAGIQLDSSSYEAMIQSRVLQQDTQGALQLFKERKESRIPKVTQKSGAETDEAGLMTKLLQEIKEGQRLDCGVHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHSPNVQTFHSMVTGYAAVGGKYQEVTELWGEMKALASSVSMKFDQELLDSVLYTFVRGGFFVRANEVVAMMEKGNMFVDKYKYRMLFLKYHKSLYKGKAPKFQTESQLNKREAALAFKRWIGLT 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1296 777 PANTHER BNAC05G43320D PROTEIN 15 776 - -
Ssu4g1296 777 Pfam PPR repeat 494 519 IPR002885 -
Ssu4g1296 777 Pfam PPR repeat 324 350 IPR002885 -
Ssu4g1296 777 Gene3D Tetratricopeptide repeat domain 596 773 IPR011990 GO:0005515
Ssu4g1296 777 TIGRFAM PPR: pentatricopeptide repeat domain 626 658 IPR002885 -
Ssu4g1296 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Ssu4g1296 777 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Ssu4g1296 777 Pfam Pentatricopeptide repeat domain 544 589 IPR002885 -
Ssu4g1296 777 Pfam PPR repeat family 624 669 IPR002885 -
Ssu4g1296 777 Gene3D Tetratricopeptide repeat domain 86 387 IPR011990 GO:0005515
Ssu4g1296 777 PANTHER OS10G0422566 PROTEIN 15 776 - -
Ssu4g1296 777 Gene3D Tetratricopeptide repeat domain 448 595 IPR011990 GO:0005515
Ssu4g1296 777 Coils Coil 774 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1296 Ssu-Chr4 21233022 21235355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1296 494 746 Miscellaneous Gene Families AT4G11690 20.158 1.74e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1296 - - gmx:102661989 1376.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1296 4 21233022 21235355 Ssu4g1296 4 21233022 21235355 ECH