Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1294 ATGTCGTCGTTGATGGCAGATTTCCTCCGTCAAACCGGCGGCACCGCCGTCATCGACGGCGGTCTGGCGACGGAGCTGGAGCGCCATGGCGCCGATCTCAACGATCCCCTATGGAGCGCTAAATGCCTCTTTTCCTCTCCTCACCTCATTCGCCAGGTGCACCTTGATTACCTGGAAAATGGTGCAGACATTATAATCACAGCATCTTATCAAGCCACCATTCAAGGTTTTAAAGCCAAAGGTTATTCTGATGAAGAAAGTGAAGGCTTACTTAGAAGAAGTGTTGAAATTGCTTGCGAGGCCCGTGAGGTGATGGGGCTGATGGTAGAATCCTCAAACAACGACCTATCCTGGTTGCAGCATCAGTGGGGAGCTATGGAGCTTATTTGGCCGACGGATCAGAGTACAGTGGGGATTATGGTGATGCTATCACTGGTGGAAACTCTTAAAGATTTTCATCGGAGAAGAGTTCAAATTTTAGCAGAATCAGGTGCTGACCTGCTTGCATTTGAAACAGTGCCCAATAAGCTTGAAGCTGAGGCTTATGCTCAGCTTCTGGAAGAAGAGGACATAAAGATTCCAGCATGGTTTTCTTTTAACTCTAAGGATGGAGTTAATGTTGTTAGTGGTGATTCTTTAATGGAATGCGGCTCTATTGCTGAGTCATGCAATAAAGTTGTCGCCGTTGGAATCAATTGTACCCCACCTAGATTTATACATGGTCTGATAGTTTTGCTTAAGAAGGTGACTACAAAACCAATTGTTATATATCCGAACAGTGGGGAAACTTATGATGCTGACCTAAAGGAGTGGGTGCAAAATACTGGTGTTACAGATGAAGATTTTATCTcatatgtaaataaatggtgTGAGTTAGGGGCTTCCCTTGTAGGTGGCTGTTGCAGAACGACTCCTGCTACTATTAGGAAGATATACAGGACACTGTCTGGCCGTCAATTTGCTATTCTTGCCACAAAGTGA 981 0.4465 MSSLMADFLRQTGGTAVIDGGLATELERHGADLNDPLWSAKCLFSSPHLIRQVHLDYLENGADIIITASYQATIQGFKAKGYSDEESEGLLRRSVEIACEAREVMGLMVESSNNDLSWLQHQWGAMELIWPTDQSTVGIMVMLSLVETLKDFHRRRVQILAESGADLLAFETVPNKLEAEAYAQLLEEEDIKIPAWFSFNSKDGVNVVSGDSLMECGSIAESCNKVVAVGINCTPPRFIHGLIVLLKKVTTKPIVIYPNSGETYDADLKEWVQNTGVTDEDFISYVNKWCELGASLVGGCCRTTPATIRKIYRTLSGRQFAILATK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1294 326 PANTHER ZGC:172121 146 320 - -
Ssu4g1294 326 PANTHER HOMOCYSTEINE S-METHYLTRANSFERASE 2 2 109 - -
Ssu4g1294 326 ProSiteProfiles Homocysteine-binding domain profile. 4 315 IPR003726 -
Ssu4g1294 326 Pfam Homocysteine S-methyltransferase 17 313 IPR003726 -
Ssu4g1294 326 PIRSF BHMT 255 325 IPR017226 GO:0008168|GO:0008270|GO:0009086
Ssu4g1294 326 PIRSF BHMT 8 111 IPR017226 GO:0008168|GO:0008270|GO:0009086
Ssu4g1294 326 PANTHER HOMOCYSTEINE S-METHYLTRANSFERASE 2 146 320 - -
Ssu4g1294 326 PANTHER ZGC:172121 2 109 - -
Ssu4g1294 326 Gene3D - 6 313 IPR036589 -
Ssu4g1294 326 SUPERFAMILY Homocysteine S-methyltransferase 12 318 IPR036589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1294 Ssu-Chr4 21205760 21211467 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1294 K00547 - gmx:100790567 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1294 4 21205760 21211467 Ssu4g1294 4 21205760 21211467 ECH