Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1280 ATGGCAGGTGCACTAACAGAACATCAGATTGCTGAATTCCAGGAAGCCTTTTGCCTCATTGACAAGGACTCTAATGGATTCATTACAGTGGACGAACTGGCTGCCATGATCCGATCATTAGATGGGAATCCTACAAAAGAAGAAACCCAAGACATGATTAGTGAAGTCGATATTGTTGGGAATGGGAGTATAGATTTTGAAGAGTTTTTGAATATTATGGGTAGAAAAATGAAGgaaaatcAAGCTGAAGAGCTGAAAGAAGCATTCAAAGTGTTTGATAGAGATCAAGATGGATACATATCCGCCACCGAGCTGAGACATGTAATGATGAATTTGGGAGAGAGGCTTACAGTCGAAGAGGCTGAACAAATGATTAGAGAGGCTGATTGGGATGGTGATGGTCAAGTTAGCTTTGAAGAATTTGCAAGGATTATGATGCTGAAATGA 447 0.3982 MAGALTEHQIAEFQEAFCLIDKDSNGFITVDELAAMIRSLDGNPTKEETQDMISEVDIVGNGSIDFEEFLNIMGRKMKENQAEELKEAFKVFDRDQDGYISATELRHVMMNLGERLTVEEAEQMIREADWDGDGQVSFEEFARIMMLK 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1280 148 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Ssu4g1280 148 Gene3D - 75 148 - -
Ssu4g1280 148 CDD EFh 84 146 IPR002048 GO:0005509
Ssu4g1280 148 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Ssu4g1280 148 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Ssu4g1280 148 SMART efh_1 12 40 IPR002048 GO:0005509
Ssu4g1280 148 SMART efh_1 48 76 IPR002048 GO:0005509
Ssu4g1280 148 SMART efh_1 120 148 IPR002048 GO:0005509
Ssu4g1280 148 SMART efh_1 84 112 IPR002048 GO:0005509
Ssu4g1280 148 SUPERFAMILY EF-hand 4 146 IPR011992 -
Ssu4g1280 148 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Ssu4g1280 148 PANTHER CALCIUM BINDING PROTEIN 1 146 - -
Ssu4g1280 148 Pfam EF-hand domain pair 12 73 IPR002048 GO:0005509
Ssu4g1280 148 Pfam EF-hand domain pair 83 145 IPR002048 GO:0005509
Ssu4g1280 148 PANTHER CALMODULIN-LIKE PROTEIN 9 1 146 - -
Ssu4g1280 148 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Ssu4g1280 148 Gene3D - 3 74 - -
Ssu4g1280 148 ProSiteProfiles EF-hand calcium-binding domain profile. 116 148 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1280 Ssu-Chr4 20845161 20846016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1280 1 148 EF-hand Containing Proteins AT3G56800 63.758 3.81e-65 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1280 K02183 K13448 gmx:100527005 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1280 4 20845161 20846016 Ssu7g2157 7 42409118 42410017 PCT