Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1273 ATGGCTCTTGATCTGAAGCCAAGTTGCTTCTTGCAATTGAAGAAGTCTGAGGCTCGTTTCCTGGCTTGTTTTTCCTCCAAGAGAGCTATAATCTCTGTGAAAAGGTGCACTCCAGTGGCTGCTATCAGGACCATGGAAGCAGTGGGACTCTCTGAAACATTCACCAAACTGAAAAAACAAGGAAAGGTGGCTTTCATCCCATATATCACTGCTGGTGATCCTGACCTCTCAACCACAGCAGAAGCACTGAAAGTGCTTGATTCATGTGGGTCTGACATAATTGAGCTAGGCGTTCCATACTCAGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTTAATGCGATTATTTCTATGTTGAAGGAGGTTGTTCCGCAATTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAGGCGTGGTACTGATAGATTTATGTCCACCATAAGAGACAGTGGCGTACATGGGCTTGTAGTCCCAGATGTTCCTCTGGAGGAGACGGAAACTTTAAGGATAGAAGCTAAGAAAAATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCAACAGACCGAATGAAAGCCATTGTTGATGCGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGAGCATCGGTTAGTGGTACTGTTCAGTCTCTTCTGCAGGAAATTAAAGAGGCAACAACTAAACCTGTGGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGCGGGATGGGGTGCGGATGGTGTGATTGTTGGCAGTGCTATGGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGATTGAAAGAACTGGAAGTTTTCACCCGCTCCTTAAAGGAGGCACTTCCTTGA 936 0.4605 MALDLKPSCFLQLKKSEARFLACFSSKRAIISVKRCTPVAAIRTMEAVGLSETFTKLKKQGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPQLSCPIALFTYYNPILRRGTDRFMSTIRDSGVHGLVVPDVPLEETETLRIEAKKNGIELVLLTTPTTPTDRMKAIVDAAEGFVYLVSSVGVTGARASVSGTVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELEVFTRSLKEALP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1273 311 PANTHER TRYPTOPHAN SYNTHASE ALPHA CHAIN 46 310 - -
Ssu4g1273 311 ProSitePatterns Tryptophan synthase alpha chain signature. 94 107 IPR018204 GO:0004834
Ssu4g1273 311 TIGRFAM trpA: tryptophan synthase, alpha subunit 54 307 IPR002028 GO:0004834|GO:0006568
Ssu4g1273 311 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 46 310 IPR002028 GO:0004834|GO:0006568
Ssu4g1273 311 CDD Tryptophan_synthase_alpha 64 307 IPR002028 GO:0004834|GO:0006568
Ssu4g1273 311 Pfam Tryptophan synthase alpha chain 54 309 IPR002028 GO:0004834|GO:0006568
Ssu4g1273 311 Gene3D Aldolase class I 49 311 IPR013785 -
Ssu4g1273 311 SUPERFAMILY Ribulose-phoshate binding barrel 50 290 IPR011060 -
Ssu4g1273 311 Hamap Tryptophan synthase alpha chain [trpA]. 60 309 IPR002028 GO:0004834|GO:0006568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1273 K01695 - gmx:100808400 541.191