Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1267 ATGCAACCCTTCCATCCCGAACCCCACATCGCCGCCGCCGTCTCTTCCGACGCAAAGGGCGGCAAGAAACGCGGCACCTACAACTGCGGCCGCTGCGGCCTCCCTAAGAAAGGCCATGACTGCAGCGTCAAGACCCCTACCTCCGCCTCTTCCGCCACCCCTTCCCATTCCTCTCTCTCCGCCGTCTCCGCTCCCTCCTCCGCGTCCGCCGCCCGCCGCTCGCCGCCCCACCTCCGCCGCGCGCTCTCCTTCGACGACGACGCCGGTGGACTCGATCCCTCAGAGCCCGCCGACGCGTGGCCCGAAGCGGCGGATCCGGACTCGGCTGGGCTGCCGGGGAACCTTCTCTGGGAAGTGCTGAGGAGGCTGCCGCCGGCGAGGCTGTTGACGGCGGCGAAGGTGTGCAGAGGTTGGAGGGAGATGACGAGGACGTTGTGGAGGGCGGCGGAGGAGTTGAGGCTTAGGGTTCCGGCGAGGGTTCAGGTGGGTTTTGTGGCGTCGATGTTGCAGAAGTGCCCCGGGATTGTGAAACTCTCTCTTAGAATGGCAAGTGACGTGGATTCCACGATGCTGGCTTGCATTGCATTTTCATGTCCTAATTTGGCTTTCTTGGATATCTCGATTTCTGATACTGCAGTTAACCGGATCAACGGGGGTGAGTTAGGTCGATTTGTTGCTGATAAAAAGAGCCTCAAAAGCCTCAAGATGGAAGGTTGTTTTAATCTTGGAGGTTTTGTTCTTTGTTCGTCTAGTCTTTCTACCCTTTGGCTGTCCGATCTGTTCTCTCTTTCTAAGATGGTCATTAATTGCCCTCAGTTGAGAGAGATTTCATTGGAGTTTGCTCACCGAGAAAATGACAGTACTGATCTCACAACCATGGTTGAAGGTTTGGGAAGAAGTTGCCCGAGGTTGCAAAACATACACATATCTTCAATGCGGCTTTCTCATGCTGCTGTGCTTGCTCTTACTGCTGCTCAGTTAAGGGGGCTGCGAATGCTTTCACTTGTTCTTGGATCTGAAGTTACCGATGCATCTGTTGCTGCAATTGCCTCAAGCTATCTAAATCTGGAATTGCTTGATCTCAGTGGATCCAGCGTCAGTGACAGTGGCATTAACATGATTTGCAATGTGTTCTCTGAAACATTGACAAGACTCCTTCTCGCTCTTTGCCCTAATGTGACTTCAAGTGGCATTCAATTTGCTACGGCTCAATTGCCACATCTTGAACTTATGGACTGTGGCATGACCATATGTGAACCTAATTCTTACAATCCAACTGCTGATGAAAATAACTGCAAATTACGGAAAACATCTATTACTAATCTACACCTTACAAACCAAAAGCTAATAATCAAACATAGCTGTTTAAAGAAACTTAGTTTATGGGGATGCTCAGGCTTGGATGCCTTATATTTAAACTGCCCACAACTCAATGATCTGAATCTAAATTCTTGTAGAAATTTGCACCCAGAGAGATTGTTGCTTCAGTGCCCCAGTTTAGAAAATGTGCATGCATCTGGTTGTCAGGACATGTTAATTGGGGCTATCCAAAGTCAGGTTTGCAATGCTTTTACAGCTATGGAAAACCCTTCACCTTGTAAGCGTTTACCTGATGGCTCCAAAAGGGTTCGGGTTCCTCATTTAGTCAATACCGAGTCGCCTGAGGATGAAAAGAAGCGAACGAGAAATAAGAAACGGCTTTGTAACGTGCTTGTGGATTGA 1722 0.4994 MQPFHPEPHIAAAVSSDAKGGKKRGTYNCGRCGLPKKGHDCSVKTPTSASSATPSHSSLSAVSAPSSASAARRSPPHLRRALSFDDDAGGLDPSEPADAWPEAADPDSAGLPGNLLWEVLRRLPPARLLTAAKVCRGWREMTRTLWRAAEELRLRVPARVQVGFVASMLQKCPGIVKLSLRMASDVDSTMLACIAFSCPNLAFLDISISDTAVNRINGGELGRFVADKKSLKSLKMEGCFNLGGFVLCSSSLSTLWLSDLFSLSKMVINCPQLREISLEFAHRENDSTDLTTMVEGLGRSCPRLQNIHISSMRLSHAAVLALTAAQLRGLRMLSLVLGSEVTDASVAAIASSYLNLELLDLSGSSVSDSGINMICNVFSETLTRLLLALCPNVTSSGIQFATAQLPHLELMDCGMTICEPNSYNPTADENNCKLRKTSITNLHLTNQKLIIKHSCLKKLSLWGCSGLDALYLNCPQLNDLNLNSCRNLHPERLLLQCPSLENVHASGCQDMLIGAIQSQVCNAFTAMENPSPCKRLPDGSKRVRVPHLVNTESPEDEKKRTRNKKRLCNVLVD 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1267 573 Pfam F-box-like 111 147 IPR001810 GO:0005515
Ssu4g1267 573 PANTHER F-BOX/LRR-REPEAT PROTEIN 17-LIKE ISOFORM X1 9 572 - -
Ssu4g1267 573 MobiDBLite consensus disorder prediction 1 105 - -
Ssu4g1267 573 SMART LRR_CC_2 474 497 IPR006553 -
Ssu4g1267 573 SMART LRR_CC_2 198 219 IPR006553 -
Ssu4g1267 573 SMART LRR_CC_2 301 325 IPR006553 -
Ssu4g1267 573 SMART LRR_CC_2 327 352 IPR006553 -
Ssu4g1267 573 SMART LRR_CC_2 353 377 IPR006553 -
Ssu4g1267 573 SUPERFAMILY RNI-like 166 397 - -
Ssu4g1267 573 Gene3D - 109 146 - -
Ssu4g1267 573 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 9 572 - -
Ssu4g1267 573 SUPERFAMILY F-box domain 109 152 IPR036047 GO:0005515
Ssu4g1267 573 ProSiteProfiles F-box domain profile. 105 149 IPR001810 GO:0005515
Ssu4g1267 573 Gene3D Ribonuclease Inhibitor 147 529 IPR032675 -
Ssu4g1267 573 SUPERFAMILY RNI-like 355 509 - -
Ssu4g1267 573 MobiDBLite consensus disorder prediction 43 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1267 Ssu-Chr4 20655259 20660859 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1267 - - gmx:100792669 909.827