Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1247 ATGTCGAACCCTCAAAATCAGAAACCATGGAAGGCGGAGTACGCGAAGTCGGGGCGATCGTCATGCAGGACATGCAAGGCCCCCATTGCCAGCGAGGCGCTCCGTCTTGGCAAAATGGTCCAATCCACCAAATTCGATGGCCTCATGCCCatGTGGAATCATGCTGCTTGCATATTGAAGAAAGCCAATCAGATAAAATCAGTTGAAGATGTTGAAAACATAGAGTCGCTTCGTTGGGAAGATCAGCAGAAGATCAGAAAATACATAGAGAGTGGGGGTGCAGGCTCGAGCGCGATAAAGTCAAATGCTGTCAAAGATACTGAATGTGGTATTGAAGTTTCACAAACTTCTCGTGCTACTTGCAGGGATTGCggtcaaaaaattatcaaaggaGAGGTTCGTATATCTACTAAGCCCGATGGTCAAGGTGCTAAAGGTTTGGCTTGGCACCATGCCAAGTGTCTCATTGAACTATCGCCATCAATTCAAGTGGATAAGTTGTCTGGATGGAATAGTCTCTCATCTTCTGATCAATCAGCTGTCAGTGACTTGGCTAAGAAGGGTCAGCGTAAAGAATCCACACAACAAAACACTTCCAAAGGTGGCATAAAACGTGGGAAGGATGCCGATGGTGAGCGGAAATCAAAAGTTGCTAAGGCCAAGGTAGATGTGTCTGCTGGCAGCTGCATCGTCACGTGTGATCTGGAGAATAAACTGGAGGCCCAAAGCAAAGAACTCTGGGCTCTGAAGGATGATCTCAAAAAGCACGTGACAACAGCAGAGTTGCGTGAAATGCTGGAAGCCAATGGTCAAGATTCAACAGGATCAGAACTTGATTTGCGTGACCGCTGtgCTGATGGAATGATGTTTGGAGGACTTGGTCTTTGCCCAATATGTTCTGGCTTTCTGCGTTACTCTGGAGGAATGTACCGGTGCAATGGATACATTTCTGAGTGGAGTAAATGTTCTTACTCTACCTGCGAACCAAAACGTATTGAAGGGAAGTGGAAAATCCCAGGGGAAACAAATAATCAGTTCCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAGTTAGGATATTGCCTCTTCAATCACCAAGGAAATCTGCTGAAAGTCAAACTACTGCTTGTCAGCATCAGTCATCGCACAGTGAAAATTTGCGAGATTTGAAAGTTGCTATCTGTGGATTACCTAATGACTCTATTAAAGGTATCTGCTGCAGAGACcaatttatgaaaattgaaaattccaaaatatttttctgcCTCCTGTGTACACTTCTTGTAATCTTTCACGTGACTTGTTTACTTGCAGATACTAACTGCTTGGTGGTCGGTGGAACACTCAATGATGAAGCTGAGATGCGGAAGGCGTGGAGGATGAAAATACCAATAGTCAGAGAGGACTATTTGATTGACTGcatagaaagaaagaagagactTCCATTTGATATGTACAAGGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACCATTAAAGTGAAGGGACACAGTGCTGTTCACGAGGCTTCTGGCCTACAGGATTCTGGCCACATACTTGAGGAAGGGAAAAGCATATATAACACAACTCTGAATATGTCTGATTTGTCTACTGGTATTAACAGCTACTACATTCTCCAGATAATCCAAGAAGATAAGGGGTCAGATTGCTATGTGTTTCGTAAATGGGGTCGAGTGGGAAATGACAAGATTGGAGGAATTAAACTGGAGGAAATGTCGAAATCTGATGCAATCTGTGAATTCAAACGATTATTCTATGAGAAGACTGGAAACCCTTGGGAGGCATGGGAACAAAAGACTATTCAGAAACAACCTGGAAGATTTTTCCCATTGGATATTGATTATGGAGTTAACAAACAAgtctcaaaaaagaaaaaaaatgatactgaCAGCAAACTACCCCCTCCATTAATAGAGTTGATGAAGATGCTCTTCAATGTGGAAACATACAGAGCTGCCATGATGGAATTTGAGATTAATATGTCCGAAATGCCACTTGGGAAACTGAGCAAAAGCAATATCCAAAAGGGGTTTGAAGCCTTGACAGAGATACAGAATCTGTTAAAAACTAGCAATCCAGATCCATCAGTCAAGGAAAGCTTGCTTATTAATGCCAGCAACCAGTTCTTCACTGTGATCCCTTCTATTCACCCACATATTATTAGGGATGAGGATGATTTTAAGTCCAAGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCAAGATTAGTTAGATTTGATGCCAACAGTGATGACTCCATTGATGATAATTATAAGAAGCTCCACTGTGATATATCTCCACTTCCTCATGATAGTgaagatttttgtttaattgagaAGTTTCTCCATAATACTCATGCTCCCACACATACGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAAATTGATAAGTTTGCTCCTTACAGGGATAAACTTGGTAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACAAACTTTGTCGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCGGCGACTGGCTATATGTTTGGCAAAGGGGTTTACTTTGCTGACCTGGTCAGCAAAAGTGCTCAGTATTGCTACACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAGGTTGCACTTGGAAATGTCTATGAGCTCAAGAAAGCTAAGTATATGGATAAACCTCCTCAAGGAAAGCACTCGACTAAAGGACTGGGCAAGAAAATGCCTCACGAATCAGAATATGTAAAGTGGAGGGGTGATGTCACTGTTCCTTGTGGCAAACCAGTGTCATCAAATGTCAAGACTTCTGAGCTCATGTACAATGAGTATATTGTTTATAATACTGCTCAAGTTAAGACGCAATTCTTGTTGAAGGTGAGGTTTCATCACAAGAGATAA 2973 0.4083 MSNPQNQKPWKAEYAKSGRSSCRTCKAPIASEALRLGKMVQSTKFDGLMPMWNHAACILKKANQIKSVEDVENIESLRWEDQQKIRKYIESGGAGSSAIKSNAVKDTECGIEVSQTSRATCRDCGQKIIKGEVRISTKPDGQGAKGLAWHHAKCLIELSPSIQVDKLSGWNSLSSSDQSAVSDLAKKGQRKESTQQNTSKGGIKRGKDADGERKSKVAKAKVDVSAGSCIVTCDLENKLEAQSKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDRCADGMMFGGLGLCPICSGFLRYSGGMYRCNGYISEWSKCSYSTCEPKRIEGKWKIPGETNNQFLKKWFKSQKGKKPVRILPLQSPRKSAESQTTACQHQSSHSENLRDLKVAICGLPNDSIKGICCRDQFMKIENSKIFFCLLCTLLVIFHVTCLLADTNCLVVGGTLNDEAEMRKAWRMKIPIVREDYLIDCIERKKRLPFDMYKVEMIGEASSMVTIKVKGHSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGINSYYILQIIQEDKGSDCYVFRKWGRVGNDKIGGIKLEEMSKSDAICEFKRLFYEKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQVSKKKKNDTDSKLPPPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTEIQNLLKTSNPDPSVKESLLINASNQFFTVIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVRFDANSDDSIDDNYKKLHCDISPLPHDSEDFCLIEKFLHNTHAPTHTDWSLELEEVFSLEREGEIDKFAPYRDKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCYTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPQGKHSTKGLGKKMPHESEYVKWRGDVTVPCGKPVSSNVKTSELMYNEYIVYNTAQVKTQFLLKVRFHHKR 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1247 990 Gene3D BRCT domain 428 511 IPR036420 -
Ssu4g1247 990 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 641 775 IPR036616 GO:0003950
Ssu4g1247 990 ProSiteProfiles SAP motif profile. 254 288 IPR003034 -
Ssu4g1247 990 Gene3D - 2 102 IPR036957 GO:0003677|GO:0008270
Ssu4g1247 990 Gene3D - 103 205 IPR036957 GO:0003677|GO:0008270
Ssu4g1247 990 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 109 189 IPR001510 GO:0003677|GO:0008270
Ssu4g1247 990 Pfam PADR1 (NUC008) domain 282 331 IPR012982 -
Ssu4g1247 990 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 10 93 IPR001510 GO:0003677|GO:0008270
Ssu4g1247 990 Pfam WGR domain 530 608 IPR008893 -
Ssu4g1247 990 Gene3D - 630 774 IPR036616 GO:0003950
Ssu4g1247 990 SMART WGR_cls 530 613 IPR008893 -
Ssu4g1247 990 CDD WGR_PARP1_like 520 625 - -
Ssu4g1247 990 SMART PADR1_2 280 333 IPR012982 -
Ssu4g1247 990 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 13 89 IPR001510 GO:0003677|GO:0008270
Ssu4g1247 990 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 112 183 IPR001510 GO:0003677|GO:0008270
Ssu4g1247 990 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 50 984 - -
Ssu4g1247 990 ProSiteProfiles WGR domain profile. 519 618 IPR008893 -
Ssu4g1247 990 PIRSF NAD_ADPRT 3 990 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Ssu4g1247 990 Pfam Poly(ADP-ribose) polymerase, regulatory domain 641 771 IPR004102 GO:0003950
Ssu4g1247 990 ProSiteProfiles BRCT domain profile. 441 490 IPR001357 -
Ssu4g1247 990 SUPERFAMILY BRCT domain 440 490 IPR036420 -
Ssu4g1247 990 ProSiteProfiles PARP alpha-helical domain profile. 640 758 IPR004102 GO:0003950
Ssu4g1247 990 Gene3D - 227 291 - -
Ssu4g1247 990 PANTHER DNA LIGASE 50 984 - -
Ssu4g1247 990 Pfam Poly(ADP-ribose) polymerase catalytic domain 785 986 IPR012317 GO:0003950
Ssu4g1247 990 SMART zf_PARP_3 112 186 IPR001510 GO:0003677|GO:0008270
Ssu4g1247 990 SMART zf_PARP_3 13 90 IPR001510 GO:0003677|GO:0008270
Ssu4g1247 990 SUPERFAMILY ADP-ribosylation 774 989 - -
Ssu4g1247 990 MobiDBLite consensus disorder prediction 203 217 - -
Ssu4g1247 990 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 97 - -
Ssu4g1247 990 SUPERFAMILY WGR domain-like 498 623 IPR036930 -
Ssu4g1247 990 CDD parp_like 641 985 - -
Ssu4g1247 990 Gene3D - 292 352 IPR038650 -
Ssu4g1247 990 Gene3D - 775 990 - -
Ssu4g1247 990 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 109 193 - -
Ssu4g1247 990 MobiDBLite consensus disorder prediction 181 217 - -
Ssu4g1247 990 ProSiteProfiles PARP catalytic domain profile. 765 990 IPR012317 GO:0003950
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1247 Ssu-Chr4 20019345 20028839 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1247 K24070 - gmx:100800968 1751.1