Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1233 ATGTCTTTCAGAGGCCTCAGCCGGCCAAATGCTTCTTCAGGCATGGGTGTTGCTGATCACAGCAAAACCACCTTCATGGAATTGAAGCAAAAGAAGGTCCATCGTTATGTGATCTTTAAGGTTgatgaaaagaaaagggaggtTGTGGTTGAGAAGACTGGTGGCCCGGCTGAGAGCTATGACGATTTCACTGCATCTTTGCCTGAGAATGATTGCAGATATGCCGTGTTTGACTTTGATTTCGTTACTTCTGAGAATTGTCAAAAGAGCAAAATCTTCTTCATTGCATGGTCCCCTTCTACGTCTCGGATCCGTGCCAAGATGCTCTATGCCACTACTAAAGACAGGTTTAGACGTGAGCTAGATGGTGTCCATTATGAAATCCAGGCTACTGACCCCACAGAAATGGATCTTGAAGTGCTGAGGGACCGTGCACATTGA 441 0.4399 MSFRGLSRPNASSGMGVADHSKTTFMELKQKKVHRYVIFKVDEKKREVVVEKTGGPAESYDDFTASLPENDCRYAVFDFDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATTKDRFRRELDGVHYEIQATDPTEMDLEVLRDRAH 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1233 146 Gene3D Severin 5 146 IPR029006 -
Ssu4g1233 146 SUPERFAMILY Actin depolymerizing proteins 11 146 - -
Ssu4g1233 146 Pfam Cofilin/tropomyosin-type actin-binding protein 22 143 IPR002108 GO:0003779
Ssu4g1233 146 PANTHER COFILIN-RELATED 1 146 IPR017904 GO:0015629|GO:0030042
Ssu4g1233 146 SMART adf_2 19 146 IPR002108 GO:0003779
Ssu4g1233 146 ProSiteProfiles ADF-H domain profile. 14 146 IPR002108 GO:0003779
Ssu4g1233 146 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 1 146 - -
Ssu4g1233 146 CDD ADF_cofilin_like 13 145 IPR017904 GO:0015629|GO:0030042
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1233 Ssu-Chr4 19632156 19634447 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1233 K05765 - gmx:100819975 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1233 4 19632156 19634447 Ssu4g1233 4 19632156 19634447 ECH