Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1229 ATGACATCCTGCATAAGCCTGAGGCTAAGGCTAAGACTTCCACCTGCTAGAAAGGCATGGAAGAGCTTCACTTCTACCCTTGGTAAACTTCACAGGTCCAAATCCAAAGCCATGAagaaacacagaaagctttcaAAAACTACCACTAAACAGGTTACCAGGCCCCCTCCTAAGTTCCTCGCTACCAAACGTTTTCGCCGCAAAAGGGTAGCCTTAGCCACAGTCAGAAGTTTCATCAGCGGCTTCCACAAGAAGCCTGCGCCTGTGTACATTGATAAGCTCTTTAGAGAGCCTTCATGTGACTTGGTGGGGCACTTGAAGCCGCAAACAGCACACAAAGCACCAAGTGCAAAGCTCTGTGGGGAAGAAGGAACAACGAAGGGAGGTGGATCTTGCACGTCAGATGATATGTGGGAGTCGCTGGCATTAGCCTCGCCTCTAATGCAAGGAATAGATGAGCGAGCAGAGGAGTTCATCGCTAGATTCAGACAAGAGATGGCGGCGCAGGAGATGCTAGCAAGAAATTTGTAG 531 0.4783 MTSCISLRLRLRLPPARKAWKSFTSTLGKLHRSKSKAMKKHRKLSKTTTKQVTRPPPKFLATKRFRRKRVALATVRSFISGFHKKPAPVYIDKLFREPSCDLVGHLKPQTAHKAPSAKLCGEEGTTKGGGSCTSDDMWESLALASPLMQGIDERAEEFIARFRQEMAAQEMLARNL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1229 176 MobiDBLite consensus disorder prediction 31 54 - -
Ssu4g1229 176 MobiDBLite consensus disorder prediction 32 48 - -
Ssu4g1229 176 PANTHER COTTON FIBER (DUF761) 3 176 - -
Ssu4g1229 176 PANTHER DUF761 DOMAIN PROTEIN 3 176 - -
Ssu4g1229 176 Pfam Cotton fibre expressed protein 150 169 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1229 Ssu-Chr4 19552426 19552956 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1229 - - gmx:100500419 287.73