Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1227 ATGGAGCGGTTGAAGCTGGCCCAGCTGGGGGAGAGGCTGAAGACGGGCGGGGCCCAGATGGGCCGAATCGTGAGCGGGAAAGTGAAGGAGATGTTGCAGGCTCCGACGCCGGAGTCCAGGATGGTGGACGAGGCCACGCTGGAGAGGCTGGAGGAGCCCAATTGGGGCCTGAATCTCAGGATATGCGGCATGATCAACAGCGACCAGTTTAACGGCTCCGAGGTGGTCAAGGCCATCAAGAGGAAGATCAACCACAAGAGCCCCCTTGTTCAGACCCTCAGCCTCGACCTCTTGGAAGCCTGTGCCATGAATTGCGACAAGGTCTTCTCCGAAGTCGCTTCTGAGAAGGTTCTCGATGATATGGTTCGGTTGATTGACAATCCGCAGGCCCAACACCACACTCGAAGACGGGCTTTTCAATTGATTCGGGCCTGGGGCGAGTCCGAGGATCTTGCCTATCTTCCCGTCTTTCGTCAAACTTATATGAGTTTGAAAGAAAGGGATGAACCAGTTGACATGGCAGGAGGAAATTCACCACCTGTTCCGTATACCTTGGAGTCAAGTACACATCAATATCCTTTAGATCCCCCTGAAAGATACCCAATTCCTGAAGCAGGACTAGAAAATATGGATGATGCAGCAGCTTTCTCTTCTAATTACCAACACATATCAagtgaagagaagaaagagcATCTCGTGGTTGCTCGAAACAGTCTTGAATTGCTCTCTAGCATTTTGAGTTCTGAGGCAGAGCCAAAACCTTTGAAGGAAGATATAACTGTGAGCTTGTTGGACAAGTGCAAGCAATCACTCTCTATCATCAAGGGGATTGTGGAAAGCACTACAAATGATGAAGCGACGCTTTTTGAGGCTTTATATCTCAATGATGAGCTGCAACAGGTAGTTTCGAAATATGAGGAGTTAGAAGCTGCTCAAAGGTCTGGGGCACAACAACCTCAAAATGCTGACACGGCCAAGCATGATGCGGAAGCTGTTCAAAATCCCAATGAAGTACCTGAAAGATTTGAAAGTGATGAATCTGAAGAATCTGAAGCTGCTCAGAATCTGGATCGAAAGCTTCCCCAAAAGTCTAAGACTCTTGAAGTCAATGCAACTGAGGGGGTTGGTCTTGTTGAAACTAAAATAGTGGATGGAACAAAGGAGAAGAATGTTGAATCTAGTTTCAAGCGAGATACCGAATGA 1203 0.4746 MERLKLAQLGERLKTGGAQMGRIVSGKVKEMLQAPTPESRMVDEATLERLEEPNWGLNLRICGMINSDQFNGSEVVKAIKRKINHKSPLVQTLSLDLLEACAMNCDKVFSEVASEKVLDDMVRLIDNPQAQHHTRRRAFQLIRAWGESEDLAYLPVFRQTYMSLKERDEPVDMAGGNSPPVPYTLESSTHQYPLDPPERYPIPEAGLENMDDAAAFSSNYQHISSEEKKEHLVVARNSLELLSSILSSEAEPKPLKEDITVSLLDKCKQSLSIIKGIVESTTNDEATLFEALYLNDELQQVVSKYEELEAAQRSGAQQPQNADTAKHDAEAVQNPNEVPERFESDESEESEAAQNLDRKLPQKSKTLEVNATEGVGLVETKIVDGTKEKNVESSFKRDTE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1227 400 PANTHER TOM1-LIKE PROTEIN 1 1 356 IPR044836 GO:0035091|GO:0043130|GO:0043328
Ssu4g1227 400 SUPERFAMILY GAT-like domain 192 309 - -
Ssu4g1227 400 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
Ssu4g1227 400 PANTHER TOM1-LIKE PROTEIN 2 1 356 - -
Ssu4g1227 400 MobiDBLite consensus disorder prediction 310 400 - -
Ssu4g1227 400 ProSiteProfiles GAT domain profile. 223 310 IPR004152 GO:0035091|GO:0043130
Ssu4g1227 400 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
Ssu4g1227 400 CDD VHS 39 165 - -
Ssu4g1227 400 Pfam VHS domain 39 147 IPR002014 GO:0035091|GO:0043130
Ssu4g1227 400 Pfam GAT domain 236 309 IPR004152 GO:0035091|GO:0043130
Ssu4g1227 400 MobiDBLite consensus disorder prediction 382 400 - -
Ssu4g1227 400 Gene3D - 226 323 IPR038425 -
Ssu4g1227 400 Gene3D - 28 182 IPR008942 -
Ssu4g1227 400 SUPERFAMILY ENTH/VHS domain 34 167 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1227 Ssu-Chr4 19523683 19526641 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1227 - - gmx:100803803 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1227 4 19523683 19526641 Ssu4g1227 4 19523683 19526641 ECH