Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1221 ATGGGTTCTCTCCCTGCATTTCCACCCGCGCCATCCAAACAGTGCCTTAACGGGAGAAGCCACATTGACGAGAGCGCCCTCGCGGCGCTGTTCAAGTCGCAGCAGAGCCACCTGAACTTCTTCTTCGACCACATCGACCACTCCCAAACCCTAGCCTTCACGCACGCACTCCTCCACGCCGCCGGCACCGTCTTCTTCACCGGCGTCGGCAAATCCGGCTTCGTCGCGCACAAGATCTCGCAGACGCTGGTTTCCCTCGGCGTCCGCTCCGCGTTCCTGTCTCCCGTGGACGCGCTCCACGGCGACATCGGAATCCTCACCGATCGCGACGTGCTCGTCCTCCTCAGCAAGTCCGGCGCCACCGAGGAGCTCCTCCGCCTGGTGCCGTGCGCGAGGGCGAAGGGAGCGCTCCTCGTCGCGCTCACCTCCGTCGAAGGTAACGCGCTGGCGGCGATGTGCGACATGGCCGTGCATTTGCCGCTCCAGAGAGAGCTCTGTCCGTTCAACCTCGCGCCGGTCACCTCCACCGCCATTCAGATGGTGTTCGGCGACACCGTGGCCATCGCGCTCATGGAGGCGAGGAATCTCAGCAAGGAGGAGTACGCCGCGAACCATCCCGCCGGCAAGATCGGGAAGAGTCTCATCTTCAAgGTGAAGGACGTGCTGAAGAAGCAGGACGAGCTTCCGATTTGCAGAGAATCGGATTTGATTATGGATCAGCTTGTGGAACTCACGAGTAAAGGATGCGGATGCCTGCTTGTTATCGACGACAATTACCGTCTGATTGGAACGTTCACCGACGGTGATCTGCGTCGCACTCTCAGAGCCAGTGGAGAAGCCATCTTCAAACTCACTGTGGGGGAAATGTGCAACAGGAATCCGAGAATTATTGGTCCGGAGGCAATGGCGGTGGAGGCGATGAAGAAGATGGAGGCACCTCCATCGCCGGTCCAGTTTTTGCCTGTCATAAACGATGAAAACGTCTTGATTGGGATAGTCACCTTGCATGGTTTGGTGTCAGCTGGCTTGTGA 1032 0.5901 MGSLPAFPPAPSKQCLNGRSHIDESALAALFKSQQSHLNFFFDHIDHSQTLAFTHALLHAAGTVFFTGVGKSGFVAHKISQTLVSLGVRSAFLSPVDALHGDIGILTDRDVLVLLSKSGATEELLRLVPCARAKGALLVALTSVEGNALAAMCDMAVHLPLQRELCPFNLAPVTSTAIQMVFGDTVAIALMEARNLSKEEYAANHPAGKIGKSLIFKVKDVLKKQDELPICRESDLIMDQLVELTSKGCGCLLVIDDNYRLIGTFTDGDLRRTLRASGEAIFKLTVGEMCNRNPRIIGPEAMAVEAMKKMEAPPSPVQFLPVINDENVLIGIVTLHGLVSAGL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1221 343 ProSiteProfiles CBS domain profile. 290 343 IPR000644 -
Ssu4g1221 343 ProSiteProfiles CBS domain profile. 222 281 IPR000644 -
Ssu4g1221 343 Pfam CBS domain 227 274 IPR000644 -
Ssu4g1221 343 Pfam CBS domain 286 341 IPR000644 -
Ssu4g1221 343 CDD CBS_pair_SIS_assoc 214 339 - -
Ssu4g1221 343 PANTHER - 1 343 - -
Ssu4g1221 343 Gene3D - 23 212 - -
Ssu4g1221 343 ProSiteProfiles SIS domain profile. 53 196 IPR001347 GO:0097367|GO:1901135
Ssu4g1221 343 Pfam SIS domain 58 188 IPR001347 GO:0097367|GO:1901135
Ssu4g1221 343 CDD SIS_Kpsf 62 189 IPR035474 -
Ssu4g1221 343 Gene3D - 213 341 IPR046342 -
Ssu4g1221 343 PIRSF KdsD_KpsF 12 343 IPR004800 GO:0005975|GO:0016853
Ssu4g1221 343 TIGRFAM kpsF: sugar isomerase, KpsF/GutQ family 62 333 IPR004800 GO:0005975|GO:0016853
Ssu4g1221 343 SUPERFAMILY SIS domain 47 342 IPR046348 GO:0097367|GO:1901135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1221 K06041 - gmx:100805755 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1221 4 19413415 19414758 Ssu4g1221 4 19413415 19414758 ECH