Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1209 ATGGCGACGGCGGGGTTGTATCGACGCCTTCTTTCTTGTCCCCCCGCCGTCGAATTTGCTTCCTCAGGAGGCAAGCAACTTTTTCTTGAAGCCATTCAGAACGGAACCATGGAAGGCTTTTACAGGTTGGTTTCCTATTTCCAAACACAGTCTGAGCCTGCCTTTTGCGGCCTCGCTAGCTTGTCTATGGTCCTCAATGCTCTTGCCATTGATCCCGGCAGGAAATGGAAAGGCCCTTGGAGATGGTTTGATGAATCTATGTTGGACTGTTGTGAACCTCTAGAAATGGTCAAAGCTAGAGGCATCACGTTTGGGAAGCTTGTGTGTTTGGCTCATTGTGCTGGAGCAAAAGTTGAAGCCTTTCATGCTAGCCATAGCAGCATTGACGATTTTCGCAAATATGTCGTCCAGTGTTCCATGTCTGATGACTGTCATGTGATCTCATCATACCACAGAGCTGCCCTCAAACAAACAGGAACTGGTCACTTTTCTCCTATAGGAGGATATCATGTTGGAAGGGACATGGCACTTATTTTGGATGTTGCACGTTTTAAGTATCCTCCCCATTGGGTCCCACTTAAACTTCTTTGGGAAGGCATGAATTATGCTGATGAGTCTACTGGACAATCTAGGGgGTTCATGCTTATATCAAGGCCTCACAGGGAACCTGGCATGCTTTATACTCTGAGCTGCAAACACAGGAGTTGGATTAGTATTGCAAAATTCCTAATGGATGATGTTCCTCTTCTATTAAAATCAGAAGATGTGAAAAACATTCATCAGGTTCTTTCAATTATAGTCACATCACTTCCTTCTAATTTTGAAGAATTCATCAAGTGGGTCGCAGAGATCAGGAGGCGAGAGGACGGTGGTCCAAGTATAAGTGCAGAGGAGAAAGCAAGGCTTGCTGTCAAGGAAGAGGTATTGAAACAGGTACAGGGGACTGGGCTTTTCAAGCATGTAGCCTCTCTTTCGTCGAGTTCTTGCCGCAGGCAGACAtcaccttcaggtgatagagaCACATTACCTGTCATTGCTGCAAGTGTTTGTTGCCAAGGAGCAGAAATTTTAGGTGGAAAACTTAGCTCATCAGCAGGGTATTGCTGTCGAGAAACATGTATGGAATGCTGGAAAGCTGAAGATGACCGGCGAATAACAATGGTTTCTGGGACTGTGGTAAATGGTAACACTGACCAAGGGATTGATGTGTTGATTCCTTCATCATCTGGGAAATTTTGTTGCAGTTGCTCTAACCCAAGTAAGTACATTAGGATGCACCCAGCTAGCACTGATGTGCTAACAGTGCTTCTACTGTCCTTGCCATCAACAACATGGGCTGGCATCACAGATGAGCAGCTTTTGAAGGAAATACACGGTCTGGTTTCCATTGAAAATCTTCCTACTTTGCTCCAGGAAGAGGTTTTGCACTTGAGACGTCAGCTACACCTTCTCAAGAGATGTCAAGAGGGTAAGATAGATGAGGATCTTGGTGCGCCTCTCTCTTAG 1506 0.4489 MATAGLYRRLLSCPPAVEFASSGGKQLFLEAIQNGTMEGFYRLVSYFQTQSEPAFCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCCEPLEMVKARGITFGKLVCLAHCAGAKVEAFHASHSSIDDFRKYVVQCSMSDDCHVISSYHRAALKQTGTGHFSPIGGYHVGRDMALILDVARFKYPPHWVPLKLLWEGMNYADESTGQSRGFMLISRPHREPGMLYTLSCKHRSWISIAKFLMDDVPLLLKSEDVKNIHQVLSIIVTSLPSNFEEFIKWVAEIRRREDGGPSISAEEKARLAVKEEVLKQVQGTGLFKHVASLSSSSCRRQTSPSGDRDTLPVIAASVCCQGAEILGGKLSSSAGYCCRETCMECWKAEDDRRITMVSGTVVNGNTDQGIDVLIPSSSGKFCCSCSNPSKYIRMHPASTDVLTVLLLSLPSTTWAGITDEQLLKEIHGLVSIENLPTLLQEEVLHLRRQLHLLKRCQEGKIDEDLGAPLS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1209 501 ProSiteProfiles Phytochelatin synthase (PCS) domain profile. 1 221 IPR007719 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Ssu4g1209 501 SUPERFAMILY Cysteine proteinases 14 217 IPR038765 -
Ssu4g1209 501 Pfam Domain of unknown function (DUF1984) 231 481 IPR015407 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Ssu4g1209 501 PANTHER GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE 5 492 IPR040409 GO:0016756|GO:0046872|GO:0046938
Ssu4g1209 501 PANTHER GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE 5 492 - -
Ssu4g1209 501 Gene3D - 16 220 IPR038156 -
Ssu4g1209 501 Pfam Phytochelatin synthase 9 213 IPR007719 GO:0010038|GO:0016756|GO:0046872|GO:0046938
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1209 Ssu-Chr4 19196860 19200091 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1209 K05941 - gmx:100808418 895.575