Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1200 atgaaggattaTGGACAATCCAGCACGAGTAAAACTAAACTACTGAATCCATGGATGCTCCACTTCCAGAAACTCGCTCTCGAACTCAAGTGCCCTCTCTGTTTGAGTTTGTTCAAGCGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCGATTCCTGCTTGGCCGATTGCATAACGGCTGGGTTTGAATGTGCTGTTTGTAACGCAAAGTATGGTCAAACAGATGTAAGGCACGTGCCTTTTGTGGAAAACGTGGTGGCAATATATAGAAGCTTGGATGCTACCTTTTGTGCTAGTCTGTTTCAGCAACGTTCTGGTGATTTGAGGGTTTTGGAGCCGTGCCAAGGATTTCTTGATTCAACTTCTGGTGGTATAAAAGCTGGCAAGCTTCCTTTGAATTTACCTAATTCTAATGGGGCGGGGTTGGCAAGAATCACAAATCAAAGATTGTGA 456 0.4408 MKDYGQSSTSKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCDSCLADCITAGFECAVCNAKYGQTDVRHVPFVENVVAIYRSLDATFCASLFQQRSGDLRVLEPCQGFLDSTSGGIKAGKLPLNLPNSNGAGLARITNQRL 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1200 151 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Ssu4g1200 151 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 12 110 - -
Ssu4g1200 151 ProSiteProfiles Zinc finger RING-type profile. 31 69 IPR001841 -
Ssu4g1200 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 115 IPR013083 -
Ssu4g1200 151 SUPERFAMILY RING/U-box 28 91 - -
Ssu4g1200 151 SMART ring_2 31 68 IPR001841 -
Ssu4g1200 151 Pfam Zinc finger, C3HC4 type (RING finger) 28 72 - -
Ssu4g1200 151 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 12 110 IPR031099 GO:0006281|GO:0006974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1200 K10683 - gmx:100306420 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1200 4 19069298 19070337 Ssu4g1200 4 19069298 19070337 ECH