Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1196 ATGGCAGTGGTAGAAGAAAAAGGCCTTGCAAGTGGAAGAGAAGATTACACCCAAGATGGCACAGTGGACCTCAAATGTAGACCAGTTTTAAGATCAAATACTGGAAGATGGAGAGCTTGTTCCTTCATTGTAGGGTATGAAATGATTGAAAGGATGGCATACTATGGGATATCCTCAAACCTAGTGCTGTATCTAACAAAGAAGCTCCACGAGGGCACTGTGAAATCTTCAAACCACGTTACCAATTGGGTGGGTACAGTGTGGATGATGCCAGCTGCGGGGGCTTACATAGCCGATGCCTATCTTGGCCGATATTGGACCTTTGTAATAGCATCAGCCATTTACCTTCTGGGAATGTGTTTGTTGACTCTAGCAGTGTCACTACAAGCATTGAGACCACCACCATGTGCTCCAGGCGTAGCAGATAAGGATTGCCAGCGAGCATCGTCATTGCAAGCGGGAATTTTCTTCTCTGCCTTGTACATCATTGCTGCAGGCACTGGGGGAACCAAACCCAACATTTCTACAATGGGAGCAGACCAATTTGACGAGTTTGAGCCCAAGGAGAGGCATAGATTGCCCTCAGGCAGCCCATTAACCAGCATAGTTCAGGTCTTTGTGGCTGCTATGAGGAAGTGCAAGGTACATGTCCCTGATGATCTAAATGAGCTACATGAACTGAGCAAGGAAGAGTATTATGCAAGCAAAGGGAGAAGCAGAATTTATCACAGCTCTTCGTTAAGGCTAACACTCGGCAATCTTATAACCTTGACAAATGTTTGCAGCTTCCTTGACAAAGCTGCAGTGAAGACAGGCCAAACATCCCTATGGATACTTTGTACCGTGACTCAAGTTGAGGAAACCAagcaaatgatgaaaatgattcCTATTTTGATTACTACATGTATTCCAAGCACCATAATAGCTCAAACCAGCACACTCTTCATCAGACAAGGCACCACACTAGACAGGAGAATGGGACCCCATTTTGAAATCCCTCCGGCATGTCTTATAGCATTTGTAAACATCTTCATGCTGATAAGCGTTGTGATCTATGACCGCCTTTTTGTTCCTGCAATCCGGCTCTACACGAAGAACCCCAGAGGGGTATCCTTGCTGCAGAGACTTGGAATTGGCCTTGTGCTACATGTTATTATAATGCTCACTGCATGCTTAGTTGAGAGGAAGAGACTCAGTGTTGCAAGAGAAAACCACCTCTTAGGCCAGCATGATACAATTCCTCTAACTATTTTCATCCTCCTCCCTCAGTTTGCTTTTACAGGGATTGCTGATACCTTTGTCGATGTTGCTAAGTTGGAGTTCTTCTATGATCAAGCACCAGAAGCCATGAAAAGTTTGGGAACATCATATTTCACAACCACCTTGAGCATTGGAAATTTTCTTAATACTTTTCTTCTTTCAGCTGTTGCTGATCTCAGCCGTAGACATGGTCGTAAGGGTTGGATTTTGGATAATCTAAATGTCTCCCGTttagattattattatgcatTCTTGGCAATGCTGAGCGCTTTCAACTTCCTCTGCTTTATGGTTGTTGCCAAGTTTTTTGTCTATAATGATGATGTAACACAAACCAAAATGGACTTGGATATGAACCCTGCTTCATCTGAGGACAATACTGGAATAAGCCAAAGCACCCCACAACCAGATGCCAAGTCCTAG 1683 0.4337 MAVVEEKGLASGREDYTQDGTVDLKCRPVLRSNTGRWRACSFIVGYEMIERMAYYGISSNLVLYLTKKLHEGTVKSSNHVTNWVGTVWMMPAAGAYIADAYLGRYWTFVIASAIYLLGMCLLTLAVSLQALRPPPCAPGVADKDCQRASSLQAGIFFSALYIIAAGTGGTKPNISTMGADQFDEFEPKERHRLPSGSPLTSIVQVFVAAMRKCKVHVPDDLNELHELSKEEYYASKGRSRIYHSSSLRLTLGNLITLTNVCSFLDKAAVKTGQTSLWILCTVTQVEETKQMMKMIPILITTCIPSTIIAQTSTLFIRQGTTLDRRMGPHFEIPPACLIAFVNIFMLISVVIYDRLFVPAIRLYTKNPRGVSLLQRLGIGLVLHVIIMLTACLVERKRLSVARENHLLGQHDTIPLTIFILLPQFAFTGIADTFVDVAKLEFFYDQAPEAMKSLGTSYFTTTLSIGNFLNTFLLSAVADLSRRHGRKGWILDNLNVSRLDYYYAFLAMLSAFNFLCFMVVAKFFVYNDDVTQTKMDLDMNPASSEDNTGISQSTPQPDAKS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1196 560 Pfam POT family 191 489 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g1196 560 PANTHER PEPTIDE TRANSPORTER 191 541 - -
Ssu4g1196 560 Gene3D MFS general substrate transporter like domains 192 532 IPR036259 -
Ssu4g1196 560 Gene3D MFS general substrate transporter like domains 9 191 IPR036259 -
Ssu4g1196 560 PANTHER PEPTIDE TRANSPORTER 19 190 - -
Ssu4g1196 560 SUPERFAMILY MFS general substrate transporter 27 190 IPR036259 -
Ssu4g1196 560 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 19 190 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g1196 560 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 191 541 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g1196 560 MobiDBLite consensus disorder prediction 536 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1196 Ssu-Chr4 19052561 19056386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1196 16 528 Organic Solute Cotransporters AT2G40460 43.234 1.42e-147 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1196 - K14638 lja:Lj1g3v4515810.1 676.011