Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1195 ATGGGTTGCTTTCTTCATTGTTTTGGTTCCTCCCAAAGCACAAAACCGAGGCGCAAGGCACACCATCATCACCATCGAAATGCTAGAGACAGGTTAGAGCAACCTACGGTGTGTTCTGTTCAGGATTACTCCAAAACGGTGGTACTTAGCACTGCATCGCAAGTCCAGGCTAAACCTGAGGAGAAGCTAAACGCCAGCCCCCGAAAGAAAGTAACTTTTGATGTCAATGTGAAAACGTACGAGCCTGATGAAGTTGCTGATTTCCAACTTGAGAAAAGTGAGGAGGGTAGAGAGGAAAGAGCCTTGGTTGAAAAATTAGGCCAATCAAAGTCTTACTCTGAAGAAAGTTCGGTGACTTCAACAGGGTCTTACCCAACAAACTATAGGTACCACAATTGCTCATGtagtgatgatgaagatgaagcAGCGGATAATTGGGATAGTGATCTAACTGATGAGGATGAGgatggtggtgatagtgacATGGGAGAAGAGTATGATGAAATGGGAGAGGACTTTGAAGATGGGATAGTGTACTCAAGGTCAAGAAATGGTGATAATCCAAGGGTTGTTGAAGAGGTGGAAAGTCCAATTCCAATGTATGATAACGATGTGAAGTCAATTGGGTTGAACCGCAATGCTCGAGATAGGAGTGTGTATGTTCATCCCGTGCTGAACCCTGTGGAGAACCTCACTCAGTGGAAAGCAGTTAAGGCTAAAAGAGCACCACCATTGGTGTCTCGGAAGGagaattttgttttgaatcAAGAGTCTCGAACTGCATTTGGTGCAGAATCACCTAAGAAGTTGAACCGGGAAATCACGGTTGATGCTAGCCTCTCAAATTGGTTGGCTTCATCAGAAACTACACCTGTTAACAAGGGTTTGTATGCGGGTACCCCAGAGTGGGGAAGTTCACAAGGCTCAAATTCAGTGATGAGTCATGAAGATAGGCCTATTTTAGGTGCGTTGACGGTTGAAGAGCTCAAACAGTTTTCAGCTTCTTCTTCGCCAAGTAAATCACCAAGAGATGAGATGCCCATTGTAGGCAGTGTTGGGAGCTACTGGAATTGTGGGGGATATGCTGACCATTCTGGCTCAGCAAATCGGGTAAGTTCAAGGAGGGTACATTTGGAATGA 1140 0.4316 MGCFLHCFGSSQSTKPRRKAHHHHHRNARDRLEQPTVCSVQDYSKTVVLSTASQVQAKPEEKLNASPRKKVTFDVNVKTYEPDEVADFQLEKSEEGREERALVEKLGQSKSYSEESSVTSTGSYPTNYRYHNCSCSDDEDEAADNWDSDLTDEDEDGGDSDMGEEYDEMGEDFEDGIVYSRSRNGDNPRVVEEVESPIPMYDNDVKSIGLNRNARDRSVYVHPVLNPVENLTQWKAVKAKRAPPLVSRKENFVLNQESRTAFGAESPKKLNREITVDASLSNWLASSETTPVNKGLYAGTPEWGSSQGSNSVMSHEDRPILGALTVEELKQFSASSSPSKSPRDEMPIVGSVGSYWNCGGYADHSGSANRVSSRRVHLE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1195 379 PANTHER RRNA BIOGENESIS PROTEIN RRP36 1 367 - -
Ssu4g1195 379 MobiDBLite consensus disorder prediction 11 32 - -
Ssu4g1195 379 PANTHER ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) AMIDOTRANSFERASE SUBUNIT 1 367 IPR039300 GO:0007142
Ssu4g1195 379 MobiDBLite consensus disorder prediction 109 132 - -
Ssu4g1195 379 MobiDBLite consensus disorder prediction 139 163 - -
Ssu4g1195 379 MobiDBLite consensus disorder prediction 105 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1195 Ssu-Chr4 19038505 19039953 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1195 - - gmx:100787541 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1195 4 19038505 19039953 Ssu4g1195 4 19038505 19039953 ECH