Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1192 ATGACTAGTTTTCAAAAGGTTCATGCCCTTCTCTTCCATATACTGTTGATATCTTTGCTTCCATTGAAAATCACCTCATCACCAAGAACGGAAGCAGAAGCCCTTGTCAAATGGAAAAATAGTCTATcccctcctcttcctctctctctaaacTCATGGTCCCTCACCAACCTTGGCAACCTTTGCAATTGGGATGCCATTGTTTGTGACAACACTAACACAACAGTCTCAGAGATAAACTTCTCTGGTGCCAATCTCACCGGGACTCTCACTGGCTTGGATTTTGCTTCCCTCCCTAACCTCACTCAACTCAGCCTCAATGGCAACAACTTTGGGGGGTCAATACCATCAACAATTGGTAACCTCTCCAAGCTCACTTTATTGGACCTGGCTAACAACTTATTTGAAGACACACTGCCTTATGAGCTAGGCCAGCTAAGGGAGCTTCAATATCTTAGTTTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTCCCTAAGGTATGGTACATGGACCTTGGATCAAACTACTTTATAACTCCTCCTGACTGGTCCCAAAATTCAGGCATGCCTTCCTTAACACGCCTTGCTTTGCATCTCAATGACTTCACTGGTGAAATTCCAAGTTTCATACTGGAGTGCCAGAACTTGACATACCTTGACATCTCTTATAATCACTGGAATGTCACAATACCAGAATCCATATATAGCAATTTGGGCAAGCTTGAATACCTCAACCTCACCAACTGTGGGCTAGAAGGAAAACTGTCACCCAACTTGTCCATGCTTTCTAATCTCAAAGAACTTAGAATAGGTAATAACACGTTTAATGGTTCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAATTTCTTGAATTGAATAACATTTCTGCCCATGGGAAAATTCCTTCTTCCTTGGGCCAACTCAGGGAGCTATGGCATCTTGATctcagtaataatttttttaactctacaaTCCCTTCTGAGCTTGGCCTATGCACAAATCTAACCTTTTTGAGTCTAGCGTTGAATAGTTTGACCGGTCCTTTGCCTATGTCCTTAGCTAATCTGGCTAAAATATCAGAATTAGGATTATCAGATAATTCCTTTTCTGGTCAACTTTCAGCTTCACTCATCTCTAATTGGACCCAGTTGATCTCCTTGCAAGtccaaaacaataaatttacaGGAAATATTCCTCCACAGATTGGcctgttgaaaaaaattaacttcctCTATCTGTACAATAATCTGTTCTCTGGTTCCATTCCTGTAGAGATTGGAAACCTGAAGGAAATGATAGAGTTAGACCTTTCACAAAACCAATTCTCTGGTCCAATTCCATCAACACTTTGGAATCTGACAAACGTTCAAGTCGTCAATCTTTTCTTCAATGTGCTCTCTGGAACCATTCCCTTGGATATTGGAAACTTAACCTCACTGCAAATCTTTGATGTGAACACCAATAACTTGTTTGGGGAGTTGCCAGAGACCATAGCTCAACTAACTGCTTTAAGAAATTTTTCTGTGTTCACCAATAACTTCACTGGCAGCATTCCAAGAGAATTTGGAAAGAGTAATCCTTCTTTGACTCATGTCTACCTTTCAAACAACAGCTTCTCTGGAGAACTGCCCCCTGACTTGTGCAGTGATGGCAAGCTAATTATTTTGGCAGTCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCCTTGAGAAGTTGTTTATCATTAACTAGAGTTCGGCTTGATGATAATCAGTTCACTGGAAACATCACAGACGCATTTGGGGTACTCCCAAATCTTGTTTTCATCTCACTTAGTGGAAATCAGCTTGTTGGTGAGCTCTCCCCGGAGTGGGGTGAATGTGTCAACTTAACTCGGATGGATATGGGAAGCAACAAACTTTCTGGAAAAATTCCATCTGAGCTAAGCAAGTTGAGTCAATTAAGGTATCTGAGCCTTCACTCCAATGATTTCACTGGCAGTATCCCACCTGAAATTGGAAATCTAGGCCTGCTTTTCATGTTCGACTTGAGTGGTAACCATTTATCAGGAAAAATCCCAAAGAGTTATGGTAGATTGGCTCAGCTAAATGATCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAGAGAGCTCAGTGATTGTAATCGCTTACTGAGTCTGAATTTAAGCCATAACAATCTATCAGGGGAGATACCATATGAACTTGGCAATCTGTTCTCACTCCAATACTTGTTGGACCTCAGCAGCAACTCTCTCTCGGGGGCTCTTCCCCAAAACCTTGAAAAGTTAGCATCGTTGCAGATTCTCAATGTCTCACACAACCATCTGTCAGGGACAATCCCACAATCATTTTCAAGCATGCTCAGCCTTCAATCTATTGATTTTTCTTACAACAATTTGAGTGGTTCAATTCCCACAGGTGGTGTTTTCCAGACAGCAACTGCTGAAGCCTATGTTGGGAACTCAGCTCCAGAGTCCAGACCCGTGATGTGCTCTGTGGCACAAGAATTGCCGTTGGCTATTACGCAGGCTTGTCTTGCCGAGCCATTTGGCATGATAACCATAAACAAGCTTACAGGGTTGCAGAAATAG 2628 0.4053 MTSFQKVHALLFHILLISLLPLKITSSPRTEAEALVKWKNSLSPPLPLSLNSWSLTNLGNLCNWDAIVCDNTNTTVSEINFSGANLTGTLTGLDFASLPNLTQLSLNGNNFGGSIPSTIGNLSKLTLLDLANNLFEDTLPYELGQLRELQYLSFYNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPPDWSQNSGMPSLTRLALHLNDFTGEIPSFILECQNLTYLDISYNHWNVTIPESIYSNLGKLEYLNLTNCGLEGKLSPNLSMLSNLKELRIGNNTFNGSVPTEIGLISGLQFLELNNISAHGKIPSSLGQLRELWHLDLSNNFFNSTIPSELGLCTNLTFLSLALNSLTGPLPMSLANLAKISELGLSDNSFSGQLSASLISNWTQLISLQVQNNKFTGNIPPQIGLLKKINFLYLYNNLFSGSIPVEIGNLKEMIELDLSQNQFSGPIPSTLWNLTNVQVVNLFFNVLSGTIPLDIGNLTSLQIFDVNTNNLFGELPETIAQLTALRNFSVFTNNFTGSIPREFGKSNPSLTHVYLSNNSFSGELPPDLCSDGKLIILAVNNNSFSGPLPKSLRSCLSLTRVRLDDNQFTGNITDAFGVLPNLVFISLSGNQLVGELSPEWGECVNLTRMDMGSNKLSGKIPSELSKLSQLRYLSLHSNDFTGSIPPEIGNLGLLFMFDLSGNHLSGKIPKSYGRLAQLNDLDLSNNNFSGSIPRELSDCNRLLSLNLSHNNLSGEIPYELGNLFSLQYLLDLSSNSLSGALPQNLEKLASLQILNVSHNHLSGTIPQSFSSMLSLQSIDFSYNNLSGSIPTGGVFQTATAEAYVGNSAPESRPVMCSVAQELPLAITQACLAEPFGMITINKLTGLQK 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1192 875 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Ssu4g1192 875 SUPERFAMILY L domain-like 534 825 - -
Ssu4g1192 875 SUPERFAMILY RNI-like 289 619 - -
Ssu4g1192 875 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Ssu4g1192 875 Gene3D Ribonuclease Inhibitor 189 287 IPR032675 -
Ssu4g1192 875 Pfam Leucine Rich Repeat 777 798 IPR001611 GO:0005515
Ssu4g1192 875 Pfam Leucine Rich Repeat 246 266 IPR001611 GO:0005515
Ssu4g1192 875 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 632 817 - -
Ssu4g1192 875 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 442 625 - -
Ssu4g1192 875 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 192 384 - -
Ssu4g1192 875 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 19 327 - -
Ssu4g1192 875 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 243 512 - -
Ssu4g1192 875 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 518 729 - -
Ssu4g1192 875 SUPERFAMILY L domain-like 45 379 - -
Ssu4g1192 875 Gene3D Ribonuclease Inhibitor 288 384 IPR032675 -
Ssu4g1192 875 Gene3D Ribonuclease Inhibitor 385 505 IPR032675 -
Ssu4g1192 875 Gene3D Ribonuclease Inhibitor 513 843 IPR032675 -
Ssu4g1192 875 SMART LRR_typ_2 316 340 IPR003591 -
Ssu4g1192 875 SMART LRR_typ_2 437 461 IPR003591 -
Ssu4g1192 875 SMART LRR_typ_2 775 798 IPR003591 -
Ssu4g1192 875 SMART LRR_typ_2 654 678 IPR003591 -
Ssu4g1192 875 SMART LRR_typ_2 485 509 IPR003591 -
Ssu4g1192 875 SMART LRR_typ_2 702 726 IPR003591 -
Ssu4g1192 875 SMART LRR_typ_2 195 219 IPR003591 -
Ssu4g1192 875 SMART LRR_typ_2 122 146 IPR003591 -
Ssu4g1192 875 SMART LRR_typ_2 98 121 IPR003591 -
Ssu4g1192 875 SMART LRR_typ_2 535 558 IPR003591 -
Ssu4g1192 875 SMART LRR_typ_2 799 824 IPR003591 -
Ssu4g1192 875 SMART LRR_typ_2 606 630 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1192 Ssu-Chr4 18997722 19002131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1192 240 834 Receptor kinase-like Gene Family AT4G08850 41.107 7.80e-124 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1192 - - gmx:100809137 1398.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1192 4 18997722 19002131 Ssu4g1192 4 18997722 19002131 ECH