Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1190 ATGGCCAAGTTTCTGGCACTCTCACTAGTCATATCAAGCCTCTTCATTGGCTTAGGGAGTGCGGAATGGAACATATTGACCCAAAGATGGAGAAAAGGGGTTGAACTTGAAGACAACTTGAAGAACTATTGCGAGAGTTGGAGGATAAATGTTGAACTTAACAACATTAGGGGGTTCGGTGTTGTGCCTCAAGAATGTGTGAATCACGTGAAGAAATACATGACTTCATCTCAGTACAAGGCTGACTCGGTGAGGGCAGTGGAGGAGGTTAGGCTCTATTTGAGTGGGTGCTGCACTTTGAAAGGTGATGGCAAAGATTCCTGGATTTTTGATATTGACGAGACCCTTTTGTCCACAATTCCTTATTATAAAAAGCATGGTTTTGGGGGAGAAAAGCTGAACGCAACCTCTTTAGAAGCATGGATGAAGCAAAGCAAGGCACCGGCTCTAGATCACACACTCGAGCTCTTCCATGAAATCAAGAACAGAGGGATCAATATCTTTCTGATTTCTTCAAGAAAGGAGAACCTTAGATCTCCCACCGTAGACAACCTTGTGAAGGTTGGGTACCATGGATGGGCTAGTCTTACATTCAgGGGTCTTGATGATGAATTGCTGGAAGTGAAAAAATACCATTCCAAGGTGAGGCAACAATTGGTTGATGAAGGGTACCGCATATGGGGTATTGTGGGAGACCAATGGAGCAGTTTTGATGGGCTTCCAATGGCAAAGAGAACATTCAAACTACCCAATTCCATTTACTATGTAGCATAA 774 0.4354 MAKFLALSLVISSLFIGLGSAEWNILTQRWRKGVELEDNLKNYCESWRINVELNNIRGFGVVPQECVNHVKKYMTSSQYKADSVRAVEEVRLYLSGCCTLKGDGKDSWIFDIDETLLSTIPYYKKHGFGGEKLNATSLEAWMKQSKAPALDHTLELFHEIKNRGINIFLISSRKENLRSPTVDNLVKVGYHGWASLTFRGLDDELLEVKKYHSKVRQQLVDEGYRIWGIVGDQWSSFDGLPMAKRTFKLPNSIYYVA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1190 257 CDD HAD_VSP 70 256 - -
Ssu4g1190 257 PIRSF VSP 1 257 IPR014403 -
Ssu4g1190 257 Pfam HAD superfamily, subfamily IIIB (Acid phosphatase) 41 256 IPR005519 -
Ssu4g1190 257 SUPERFAMILY HAD-like 99 243 IPR036412 -
Ssu4g1190 257 Gene3D - 40 257 IPR023214 -
Ssu4g1190 257 PANTHER ACID PHOSPHATASE-LIKE PROTEIN 1 257 - -
Ssu4g1190 257 PANTHER ACID PHOSPHATASE 1 1 257 - -
Ssu4g1190 257 TIGRFAM plant-AP: plant acid phosphatase 38 257 IPR010028 GO:0003993
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1190 Ssu-Chr4 18982769 18984704 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1190 - - gmx:100785781 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1190 4 18982769 18984704 Ssu4g1190 4 18982769 18984704 ECH