Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1185 ATGGAAGCCAGTGGAAGCATGGATCTTGCAAATAATGTTATTGCTCGAGCAACCCAAGTCTTTGTTAAGAGACAACCAGAGATACATCTTTTTTGTGCTCGGTTCAAGGAGCAGGCTGGAGATATAGCTGGTGCTAGAGCTGCGTATCAACTTGTGCATACTGAAACTTCCCCTGGTCTTCTTGAGGCAATAATCAGGCATGCCAATATGGAATACCGAATGGGAAAATTGGAGGATGCCTTCTCTTTGTATGAACAGGCCATTGCTattgagaaaggaaaagaacattCACAAACATTGCCGTTGTTGTTTGCTCAGTATTCTCGATTTGTTTATTTgGCTTCTGGGAATGCAGAGAAGGCAAGACAGATTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAGGCTTTATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGAGTTGATATTGACTTTTTGGAGTCATGGGTTGTCAAATTCATAATGCCTAACTCAGAGAGCGCTGGTGTAGCAAGTGCAACTGAGCGTGAGGAACTTTCTAGTATTTTTCTGGAGTTTCTAAATCTCTTTGGAGATGTTCAATCTATCAAGAGGGCTGAGGATAGGCATGCCAAATTGTTTTTGCCACATCGAAGCATGTCGGAGTTGAAAAAACGTCATGCTGAGGATTTCTTAGCTTCAGACAAAACAAAAGTGCCAAGAACTTATTCTGTTCAATCACCTGCCCAATCTGTGATAGGTGCATATCCAAATGCACAGAACCAATGGACTAATTATGGAGTACAACCTCAAACTTGGCCTGCAGTTACACAAGCACAAGGACAACAATGGACTGCTGGCTACACCCAGCAGGCTTCCTATGGGGCTTATGCTGGATATGGGGGCAACTATGCAAATTCTCAATTTCCTACATCAGTTCCACAAAGTACTGCATACGGAGCCTATCCTTCTGCATATCCTGCACAGCCGGCAGTTCCTCAACAAAATTATGCACAACCTATTGCAGCCCCTGCACAGCAACCTGCTGCGGTTCCTCAAGCCTATTATGGGAGTTATTACTGA 1083 0.4303 MEASGSMDLANNVIARATQVFVKRQPEIHLFCARFKEQAGDIAGARAAYQLVHTETSPGLLEAIIRHANMEYRMGKLEDAFSLYEQAIAIEKGKEHSQTLPLLFAQYSRFVYLASGNAEKARQILVEGLENVLLSKPLLEALLHFEAIQPLPKRVDIDFLESWVVKFIMPNSESAGVASATEREELSSIFLEFLNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLASDKTKVPRTYSVQSPAQSVIGAYPNAQNQWTNYGVQPQTWPAVTQAQGQQWTAGYTQQASYGAYAGYGGNYANSQFPTSVPQSTAYGAYPSAYPAQPAVPQQNYAQPIAAPAQQPAAVPQAYYGSYY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1185 360 Gene3D Tetratricopeptide repeat domain 1 253 IPR011990 GO:0005515
Ssu4g1185 360 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 1 347 - -
Ssu4g1185 360 PANTHER PRE-MRNA-PROCESSING FACTOR 39 1 347 - -
Ssu4g1185 360 SUPERFAMILY TPR-like 5 218 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1185 Ssu-Chr4 18886155 18900222 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1185 K13217 - gmx:100787373 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1185 4 18886155 18900222 Ssu4g1185 4 18886155 18900222 ECH